Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18i18
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0001 + 1777-1935,2002-2109,2492-2560,2652-2836,3040-3055 44 1e-04
11_01_0002 + 3386-3541,3619-3717,4114-4182,4275-4459,4662-4677 44 1e-04
03_02_0553 - 9420960-9421164,9421634-9421812,9421902-9421970,942... 42 7e-04
06_01_1037 - 8140602-8140782,8141489-8141545,8141649-8141845,814... 38 0.009
07_01_0911 - 7664498-7664704,7664790-7664858,7666441-7666569 36 0.036
08_02_0737 - 20572068-20572290,20572785-20572841,20573482-205736... 31 1.0
03_03_0192 - 15308602-15308869,15309457-15309528,15310271-153103... 31 1.4
02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698... 30 1.8
07_03_1316 + 25736931-25737206,25737276-25737329,25738036-257381... 30 2.4
09_01_0112 + 1737438-1737777,1738441-1738511,1738974-1739052,174... 29 4.2
09_06_0308 - 22199389-22199451,22199604-22199924,22200178-222004... 29 5.5
08_02_1064 - 24033941-24034127,24034432-24034476,24035355-240354... 29 5.5
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273... 29 5.5
06_03_0689 + 23538367-23538474,23538583-23540557,23540647-23541092 28 7.3
>12_01_0001 + 1777-1935,2002-2109,2492-2560,2652-2836,3040-3055
Length = 178
Score = 44.4 bits (100), Expect = 1e-04
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Frame = -2
Query: 776 DIEELFGDVGGMVE-----SRLVRP-GTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
DI+ELF +VG + R R GTAEV++ + DA AV Y+N QLDG+PM L
Sbjct: 87 DIKELFSEVGDVKRYSINYDRSGRSKGTAEVVFSRKSDALAAVKRYNNVQLDGKPMKLEL 146
Query: 614 V 612
+
Sbjct: 147 I 147
>11_01_0002 + 3386-3541,3619-3717,4114-4182,4275-4459,4662-4677
Length = 174
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Frame = -2
Query: 776 DIEELFGDVGGMVESRLV------RPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
DI+ELF +VG + + GTAEV++ + DA AV Y+N QLDG+PM L
Sbjct: 83 DIKELFSEVGDVKRYSINYDKSGRSKGTAEVVFSRKSDALAAVKRYNNVQLDGKPMKLEL 142
Query: 614 V 612
+
Sbjct: 143 I 143
>03_02_0553 -
9420960-9421164,9421634-9421812,9421902-9421970,
9422452-9422607,9422756-9422968
Length = 273
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Frame = -2
Query: 776 DIEELFGDVGGMVE-----SRLVRP-GTAEVIYKTQEDAQRAVDLYHNRQLDGQPM 627
DI+ELF ++G + + R R GTAEV++ + DA AV Y+N QLDG+PM
Sbjct: 121 DIKELFSELGDLKKYVIHYDRSGRSKGTAEVVFARRGDAVAAVKKYNNVQLDGKPM 176
>06_01_1037 -
8140602-8140782,8141489-8141545,8141649-8141845,
8143174-8143242,8143347-8143490,8144055-8144225
Length = 272
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Frame = -2
Query: 776 DIEELFGDVGGMVESRLV-----RP-GTAEVIYKTQEDAQRAVDLYHNRQLDGQPM 627
DI+ELF ++G + + RP G+AEVI+ + +A A+ Y+N +LDG+PM
Sbjct: 103 DIQELFSEMGHLKHCAVHYDNNRRPTGSAEVIFTRRSEAVAALKRYNNVRLDGKPM 158
>07_01_0911 - 7664498-7664704,7664790-7664858,7666441-7666569
Length = 134
Score = 35.9 bits (79), Expect = 0.036
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = -2
Query: 776 DIEELFGDVGGMVESRL------VRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
D++ELF ++G + + GTAEV++ + DA A+ Y LDG PM +
Sbjct: 41 DVQELFSEIGELKRYSVNYDKDGKSQGTAEVVFARKVDALEAIKRYDGVILDGNPMK-ID 99
Query: 614 VVPRTLNSSSRNNSKPALYS 555
++ +S + P LY+
Sbjct: 100 LIGNNSETSPMPPTAPLLYN 119
>08_02_0737 -
20572068-20572290,20572785-20572841,20573482-20573672,
20574566-20574700,20575722-20575871
Length = 251
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -2
Query: 716 GTAEVIYKTQEDAQRAVDLYHNRQLDGQPM 627
GTAEV++ + DA A+ Y+N LDG+ M
Sbjct: 96 GTAEVVFTRRSDAIAALKRYNNVLLDGKAM 125
>03_03_0192 -
15308602-15308869,15309457-15309528,15310271-15310337,
15310449-15310528,15310636-15310714,15310815-15310890
Length = 213
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Frame = -2
Query: 782 AGDIEELFGDVGGMVESRLVRP-------GTAEVIYKTQEDAQRAVDLYHNRQLDGQ 633
A D+ LF G +++ R+ R G A V YK +++AQ+AVD R +DG+
Sbjct: 29 ADDLLALFDRCGEVLDIRIPRDRRTGDSRGFAFVRYKYEDEAQKAVDKLDGRTVDGR 85
>02_02_0120 +
6984482-6984643,6984748-6984797,6984936-6984996,
6985574-6985669,6985754-6985903,6986208-6986339,
6986641-6986768,6987285-6987327,6987935-6988018,
6989049-6989090,6989264-6989334,6989621-6989674,
6989789-6989894,6990038-6990106,6990824-6990967,
6992038-6992113,6992295-6992353
Length = 508
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 620 LLVVPRTLNSSSRNNSKPALYSTNSNVEPDLSTFHKVL 507
LL V N+ S N SKPA + + DLST H +L
Sbjct: 152 LLFVLYGKNTDSGNYSKPASFEGMEKFDSDLSTLHPIL 189
>07_03_1316 +
25736931-25737206,25737276-25737329,25738036-25738189,
25740235-25740313,25740413-25740492,25740588-25740654,
25741548-25741619,25742071-25742223,25742309-25742392,
25742811-25742877
Length = 361
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Frame = -2
Query: 782 AGDIEELFGDVGGMVESRLVRP-------GTAEVIYKTQEDAQRAVDLYHNRQLDGQ 633
A D+ LF G +V+ + R G A V YK +++AQ+AVD R +DG+
Sbjct: 165 ADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDRLDGRVVDGR 221
>09_01_0112 +
1737438-1737777,1738441-1738511,1738974-1739052,
1741559-1741641,1741733-1741784,1742038-1742105,
1742279-1742345,1742426-1742505,1742576-1742640,
1742785-1742847,1743271-1743427,1743511-1743588,
1743677-1744219,1744321-1744497,1744534-1744788,
1745270-1745329,1745874-1745888,1746123-1746135,
1746819-1746934
Length = 793
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = -2
Query: 776 DIEELFGDVGGMVESRLVRP-------GTAEVIYKTQEDAQRAVDLYHNR 648
D+ LF + G +VE L++ G V Y T E+A+RA+ HN+
Sbjct: 137 DVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRALHNQ 186
>09_06_0308 -
22199389-22199451,22199604-22199924,22200178-22200423,
22202152-22203337,22203487-22203551,22204205-22204486,
22205005-22205106,22205587-22206105
Length = 927
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 716 GTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLLVVPR 603
G V T E+A++AV+++H +DG+ + PR
Sbjct: 185 GFGFVTMSTVEEAEKAVEMFHRYDVDGRLLTVNKAAPR 222
>08_02_1064 -
24033941-24034127,24034432-24034476,24035355-24035421,
24035521-24035600,24035691-24035769,24035864-24035939
Length = 177
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 716 GTAEVIYKTQEDAQRAVDLYHNRQLDGQ 633
G A V YK E+AQ+A+D R +DG+
Sbjct: 58 GFAFVRYKYAEEAQKAIDRLDGRNVDGR 85
>08_02_0210 +
14324539-14324609,14324735-14325740,14325838-14327390,
14327473-14327601,14328345-14328510
Length = 974
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -2
Query: 563 LYSTNSNVEPDLSTFHKVLFSNL*FTK 483
++ TNS+V+P L T+HK+L+ F++
Sbjct: 617 IHETNSDVKPYLETYHKLLWMRSKFSE 643
>06_03_0689 + 23538367-23538474,23538583-23540557,23540647-23541092
Length = 842
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -2
Query: 746 GMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLLVVP 606
GM+ V PG+ E + + A R LY +L G LL P
Sbjct: 754 GMLHDDFVHPGSLECVRRVNAMADRHWQLYAGEELHGDLPGHLLTYP 800
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,635,820
Number of Sequences: 37544
Number of extensions: 286465
Number of successful extensions: 608
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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