Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18i18
(783 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93241-3|CAI19835.1| 421|Homo sapiens protein ( Human DNA seque... 58 5e-08
DQ887818-1|ABI74675.1| 163|Homo sapiens POLDIP3 protein. 58 5e-08
CR456456-1|CAG30342.1| 421|Homo sapiens dJ222E13.3 protein. 58 5e-08
BC095411-1|AAH95411.1| 421|Homo sapiens polymerase (DNA-directe... 58 5e-08
BC056912-1|AAH56912.2| 392|Homo sapiens polymerase (DNA-directe... 58 5e-08
BC049840-1|AAH49840.1| 421|Homo sapiens polymerase (DNA-directe... 58 5e-08
BC001488-1|AAH01488.2| 417|Homo sapiens POLDIP3 protein protein. 58 5e-08
AY422990-1|AAQ94604.1| 421|Homo sapiens RNA-binding protein P46... 58 5e-08
AL160112-1|CAB77059.1| 392|Homo sapiens hypothetical protein pr... 58 5e-08
AL160111-1|CAB77058.1| 421|Homo sapiens hypothetical protein pr... 58 5e-08
AB055760-1|BAB33368.2| 424|Homo sapiens KIAA1649 protein protein. 58 5e-08
BC052302-1|AAH52302.1| 257|Homo sapiens THO complex 4 protein. 38 0.031
AF047002-1|AAD09608.1| 233|Homo sapiens transcriptional coactiv... 38 0.054
M96982-1|AAA36619.1| 240|Homo sapiens U2 snRNP auxiliary factor... 30 8.2
BC001923-1|AAH01923.1| 240|Homo sapiens U2 small nuclear RNA au... 30 8.2
BC001177-1|AAH01177.1| 240|Homo sapiens U2 small nuclear RNA au... 30 8.2
AP001748-2|BAA95534.1| 240|Homo sapiens U2 snRNP auxiliary fact... 30 8.2
AJ627978-1|CAF29556.1| 240|Homo sapiens U2 snRNP auxiliary fact... 30 8.2
>Z93241-3|CAI19835.1| 421|Homo sapiens protein ( Human DNA sequence
from clone RP1-222E13 on chromosome 22. ).
Length = 421
Score = 57.6 bits (133), Expect = 5e-08
Identities = 28/54 (51%), Positives = 35/54 (64%)
Frame = -2
Query: 776 DIEELFGDVGGMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
DI ELF G + +RLV PG AEV++ ++DA A Y+NR LDGQPM C L
Sbjct: 295 DIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNL 348
>DQ887818-1|ABI74675.1| 163|Homo sapiens POLDIP3 protein.
Length = 163
Score = 57.6 bits (133), Expect = 5e-08
Identities = 28/54 (51%), Positives = 35/54 (64%)
Frame = -2
Query: 776 DIEELFGDVGGMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
DI ELF G + +RLV PG AEV++ ++DA A Y+NR LDGQPM C L
Sbjct: 37 DIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNL 90
>CR456456-1|CAG30342.1| 421|Homo sapiens dJ222E13.3 protein.
Length = 421
Score = 57.6 bits (133), Expect = 5e-08
Identities = 28/54 (51%), Positives = 35/54 (64%)
Frame = -2
Query: 776 DIEELFGDVGGMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
DI ELF G + +RLV PG AEV++ ++DA A Y+NR LDGQPM C L
Sbjct: 295 DIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNL 348
>BC095411-1|AAH95411.1| 421|Homo sapiens polymerase (DNA-directed),
delta interacting protein 3 protein.
Length = 421
Score = 57.6 bits (133), Expect = 5e-08
Identities = 28/54 (51%), Positives = 35/54 (64%)
Frame = -2
Query: 776 DIEELFGDVGGMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
DI ELF G + +RLV PG AEV++ ++DA A Y+NR LDGQPM C L
Sbjct: 295 DIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNL 348
>BC056912-1|AAH56912.2| 392|Homo sapiens polymerase (DNA-directed),
delta interacting protein 3 protein.
Length = 392
Score = 57.6 bits (133), Expect = 5e-08
Identities = 28/54 (51%), Positives = 35/54 (64%)
Frame = -2
Query: 776 DIEELFGDVGGMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
DI ELF G + +RLV PG AEV++ ++DA A Y+NR LDGQPM C L
Sbjct: 266 DIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNL 319
>BC049840-1|AAH49840.1| 421|Homo sapiens polymerase (DNA-directed),
delta interacting protein 3 protein.
Length = 421
Score = 57.6 bits (133), Expect = 5e-08
Identities = 28/54 (51%), Positives = 35/54 (64%)
Frame = -2
Query: 776 DIEELFGDVGGMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
DI ELF G + +RLV PG AEV++ ++DA A Y+NR LDGQPM C L
Sbjct: 295 DIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNL 348
>BC001488-1|AAH01488.2| 417|Homo sapiens POLDIP3 protein protein.
Length = 417
Score = 57.6 bits (133), Expect = 5e-08
Identities = 28/54 (51%), Positives = 35/54 (64%)
Frame = -2
Query: 776 DIEELFGDVGGMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
DI ELF G + +RLV PG AEV++ ++DA A Y+NR LDGQPM C L
Sbjct: 291 DIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNL 344
>AY422990-1|AAQ94604.1| 421|Homo sapiens RNA-binding protein P46
protein.
Length = 421
Score = 57.6 bits (133), Expect = 5e-08
Identities = 28/54 (51%), Positives = 35/54 (64%)
Frame = -2
Query: 776 DIEELFGDVGGMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
DI ELF G + +RLV PG AEV++ ++DA A Y+NR LDGQPM C L
Sbjct: 295 DIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNL 348
>AL160112-1|CAB77059.1| 392|Homo sapiens hypothetical protein
protein.
Length = 392
Score = 57.6 bits (133), Expect = 5e-08
Identities = 28/54 (51%), Positives = 35/54 (64%)
Frame = -2
Query: 776 DIEELFGDVGGMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
DI ELF G + +RLV PG AEV++ ++DA A Y+NR LDGQPM C L
Sbjct: 266 DIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNL 319
>AL160111-1|CAB77058.1| 421|Homo sapiens hypothetical protein
protein.
Length = 421
Score = 57.6 bits (133), Expect = 5e-08
Identities = 28/54 (51%), Positives = 35/54 (64%)
Frame = -2
Query: 776 DIEELFGDVGGMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
DI ELF G + +RLV PG AEV++ ++DA A Y+NR LDGQPM C L
Sbjct: 295 DIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNL 348
>AB055760-1|BAB33368.2| 424|Homo sapiens KIAA1649 protein protein.
Length = 424
Score = 57.6 bits (133), Expect = 5e-08
Identities = 28/54 (51%), Positives = 35/54 (64%)
Frame = -2
Query: 776 DIEELFGDVGGMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
DI ELF G + +RLV PG AEV++ ++DA A Y+NR LDGQPM C L
Sbjct: 298 DIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNL 351
>BC052302-1|AAH52302.1| 257|Homo sapiens THO complex 4 protein.
Length = 257
Score = 38.3 bits (85), Expect = 0.031
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 6/61 (9%)
Frame = -2
Query: 776 DIEELFGDVGGMVES-----RLVRP-GTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
DI+ELF + G + ++ R R GTA+V ++ + DA +A+ Y+ LDG+PMN L
Sbjct: 121 DIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 180
Query: 614 V 612
V
Sbjct: 181 V 181
>AF047002-1|AAD09608.1| 233|Homo sapiens transcriptional
coactivator ALY protein.
Length = 233
Score = 37.5 bits (83), Expect = 0.054
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Frame = -2
Query: 776 DIEELFGDVGGMVES-----RLVRP-GTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
DI+ELF + G + ++ R R GTA V ++ + DA +A+ Y+ LDG+PMN L
Sbjct: 97 DIQELFAEFGTLKKAAVHYDRSGRSLGTANVHFERKADALKAMKQYNGFPLDGRPMNIQL 156
Query: 614 V 612
V
Sbjct: 157 V 157
>M96982-1|AAA36619.1| 240|Homo sapiens U2 snRNP auxiliary factor
small subunit protein.
Length = 240
Score = 30.3 bits (65), Expect = 8.2
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = -2
Query: 779 GDIEELFGDVGGMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
G++EE+ +V + LV G V ++ +EDA++AV +NR +GQP++ L
Sbjct: 94 GEVEEM--NVCDNLGDHLV--GNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 144
>BC001923-1|AAH01923.1| 240|Homo sapiens U2 small nuclear RNA
auxiliary factor 1 protein.
Length = 240
Score = 30.3 bits (65), Expect = 8.2
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = -2
Query: 779 GDIEELFGDVGGMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
G++EE+ +V + LV G V ++ +EDA++AV +NR +GQP++ L
Sbjct: 94 GEVEEM--NVCDNLGDHLV--GNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 144
>BC001177-1|AAH01177.1| 240|Homo sapiens U2 small nuclear RNA
auxiliary factor 1 protein.
Length = 240
Score = 30.3 bits (65), Expect = 8.2
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = -2
Query: 779 GDIEELFGDVGGMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
G++EE+ +V + LV G V ++ +EDA++AV +NR +GQP++ L
Sbjct: 94 GEVEEM--NVCDNLGDHLV--GNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 144
>AP001748-2|BAA95534.1| 240|Homo sapiens U2 snRNP auxiliary factor
small subunit protein.
Length = 240
Score = 30.3 bits (65), Expect = 8.2
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = -2
Query: 779 GDIEELFGDVGGMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
G++EE+ +V + LV G V ++ +EDA++AV +NR +GQP++ L
Sbjct: 94 GEVEEM--NVCDNLGDHLV--GNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 144
>AJ627978-1|CAF29556.1| 240|Homo sapiens U2 snRNP auxiliary factor
small subunit protein.
Length = 240
Score = 30.3 bits (65), Expect = 8.2
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = -2
Query: 779 GDIEELFGDVGGMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLL 615
G++EE+ +V + LV G V ++ +EDA++AV +NR +GQP++ L
Sbjct: 94 GEVEEM--NVCDNLGDHLV--GNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 144
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,778,935
Number of Sequences: 237096
Number of extensions: 1763956
Number of successful extensions: 6348
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6348
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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