Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18i18
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.2  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   4.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.6  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 95  KCVPINKQTKNDNNEIDFSICI*K 24
           +C+  NK T    N ++F IC  K
Sbjct: 117 ECINANKSTDKCENGLNFIICFSK 140


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 248 HKIVSFSVIYCYY 286
           HK+V  S ++CYY
Sbjct: 945 HKVVDASDVWCYY 957


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 701 IYKTQEDAQRAVDLYHNRQLDGQPMNCL 618
           I K +ED    +   HN +L+  P N L
Sbjct: 167 IKKAKEDVIEVIQKAHNMELEPTPGNTL 194


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 230 CKACYFHKIVSFSVIYCYYYFFSVNT 307
           C + +F ++ +   +  YYYFF+  T
Sbjct: 458 CPSIHFAQLFADRGMKVYYYFFTQRT 483


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 230 CKACYFHKIVSFSVIYCYYYFFSVNT 307
           C + +F ++ +   +  YYYFF+  T
Sbjct: 458 CPSIHFAQLFADRGMKVYYYFFTQRT 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,405
Number of Sequences: 438
Number of extensions: 3895
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)