Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18i17
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    29   1.1  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    27   2.4  
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    27   4.3  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   7.4  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    25   9.8  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   9.8  

>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 88  LNKHLKPISYSNISMVQFIIAVDTHKL*ILNPIKFQD 198
           L+KH+K ++ +N+    F +    +K+ IL  IKF D
Sbjct: 253 LSKHMKKVASANMDAQCFYVQNSFYKITILYEIKFDD 289


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 432 QDRYLKSTSANENSPTTLQI 491
           ++ +L +T  N NSPTT+Q+
Sbjct: 688 KENFLSTTKVNNNSPTTIQL 707


>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 576 LWIYYEGLKFY*HHHSRYDYCKVILR 499
           L +YYEG++   H    YD C   LR
Sbjct: 61  LEVYYEGVELLLHEQDFYDLCYQYLR 86


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 489 IALNVILLCSNHSENGDVNKTSAPHNISIVTIIPN*QTKILI 614
           IA  + LL +N S +G  ++    H+I  + I+P+  T +LI
Sbjct: 760 IANRMNLLLNNKSMDGMQHQPHEKHSIRTLAIVPSSSTGLLI 801


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 423 KKKQDRYLKSTSANENSPTTLQIALNV 503
           K+KQ+RY K +++NEN  T L+  L V
Sbjct: 60  KRKQERYQKFSTSNENK-TCLRYLLIV 85


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 765 FWYLGLYISYLSFHW 809
           FW+LGLYI   S +W
Sbjct: 168 FWFLGLYIYRSSNYW 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,207
Number of Sequences: 5004
Number of extensions: 64099
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)