Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18i17
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271...    31   1.5  
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549...    29   3.4  

>01_01_0335 -
           2706916-2706984,2707062-2707825,2710014-2710053,
           2710105-2710173,2710268-2710336
          Length = 336

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 675 LHCYYI*HFSHSSTTVSKNFLILIKIACNLFWYLGLYISYLSFHWFXTP 821
           +  +++  FSH+++ VS  F       C  +W  G YI+Y   H   TP
Sbjct: 170 METFFVHRFSHATSPVSNVFR-----NCAYYWTFGAYIAYYCNHPLYTP 213


>03_02_0859 - 11853928-11854138,11854225-11854683,11854760-11854991,
            11855064-11855187,11855276-11855960,11856429-11856735,
            11856832-11858188
          Length = 1124

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -2

Query: 263  NIGFIYVLTWYTVNK--*KRTSILSWNLIGFKIQSLWVSTAIINCTIDILE*EIGFRCLF 90
            N  F++VL WY +N      T+I  W+ + + +    + TA+    + IL+ ++  R L 
Sbjct: 893  NATFVFVLFWYVLNTGFTLTTAITEWSSVLYSV----IYTAVPTIVVAILDKDLSRRTLL 948

Query: 89   KVIQ 78
            K  Q
Sbjct: 949  KYPQ 952


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,109,468
Number of Sequences: 37544
Number of extensions: 309201
Number of successful extensions: 488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)