Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18i17
         (822 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 465  HLRSWTLGTCPVFFF 421
            HL +W+ G CP+ +F
Sbjct: 1480 HLNAWSDGGCPMIYF 1494


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
 Frame = -3

Query: 481 VVGLFSFALVDFRYLSCFFFQSTV--HRFRI------EHTFLCCSYLESQAKNDEVNKIL 326
           V+GL S       Y +  FF  T   +R R+      E+  L   +L++  + D   K  
Sbjct: 69  VMGLDSIDENSMTYAADIFFAQTWKDNRLRLPENMTSEYRLLEVDWLKNMWRPDSFFKNA 128

Query: 325 KSVLIVSMTLQNPESLLWV 269
           KSV   +MT+  P   LW+
Sbjct: 129 KSVTFQTMTI--PNHYLWL 145


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 197 SWNLIGFKIQSLWVSTAIINCTIDIL 120
           +W+  G  +  LWVS  +++CT  IL
Sbjct: 106 NWSF-GTIMCDLWVSFDVLSCTASIL 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,165
Number of Sequences: 438
Number of extensions: 4239
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)