Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18i14
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0501 - 4184932-4185048,4185360-4185456,4185537-4185709,418...    42   5e-04
09_06_0083 + 20753191-20754480                                         30   2.4  
06_01_1059 + 8512335-8513444                                           29   5.5  
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379...    29   5.5  
06_03_0083 + 16374830-16374922,16375917-16375974,16377893-163780...    28   7.2  
11_03_0013 - 8957277-8957355,8957485-8957591,8957700-8957915,895...    28   9.6  
08_01_0688 - 6072815-6073918                                           28   9.6  

>05_01_0501 -
           4184932-4185048,4185360-4185456,4185537-4185709,
           4186225-4186305,4186959-4187072,4187177-4187497
          Length = 300

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -2

Query: 780 VVGQEPVLARHAPAFQYSSHVSLQAPSGHMWGTFRMERED---GYTFDCRIPPFSLESKP 610
           VVG++PV+      F+YSS   L  P+G M G F M+  D     TF+  I PFSL    
Sbjct: 234 VVGEQPVIFPRT-GFEYSSACPLNTPNGRMEGDFEMKHIDKAGSSTFNVAIAPFSLSILG 292

Query: 609 DE 604
           D+
Sbjct: 293 DD 294


>09_06_0083 + 20753191-20754480
          Length = 429

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 682 RAPHMAAGGLQADVAAVLEGGGVPREHGLLPHH 780
           + P  A GG+    AA   GGG+P++HG  PHH
Sbjct: 311 KTPSGAPGGIALPPAAPA-GGGMPQQHG-SPHH 341


>06_01_1059 + 8512335-8513444
          Length = 369

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 732 YSSHVSLQAPSGHMWGTFRMEREDG 658
           ++SH  LQ P+   W  FRM R DG
Sbjct: 100 FASH-QLQGPASEWWDHFRMNRADG 123


>05_04_0206 +
           19034259-19035462,19036870-19037045,19037752-19037975,
           19038133-19038914,19039337-19039494
          Length = 847

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -1

Query: 676 DGARRRLHVRLPHPALLSREQARRDRTPRPSRVTAPPAPD 557
           D  RRRL  R   P L+S        TP+P     PP PD
Sbjct: 189 DDRRRRLRHRPQVPPLVSSPAPGTPVTPQPPPPPPPPPPD 228


>06_03_0083 +
           16374830-16374922,16375917-16375974,16377893-16378089,
           16378176-16378292,16378437-16378497,16378603-16378691,
           16378808-16378882,16378992-16379080,16379203-16379252,
           16379539-16379699,16380004-16380132,16380548-16380928
          Length = 499

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 631 LLSREQARRDRTPRPSRVTAPPAPD 557
           LL   +AR D  P P  V +PPAP+
Sbjct: 432 LLQDHRARSDDPPSPITVASPPAPE 456


>11_03_0013 -
           8957277-8957355,8957485-8957591,8957700-8957915,
           8958191-8958907,8959483-8959656,8960292-8960546
          Length = 515

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = -2

Query: 780 VVGQEPVLARHAPAFQYSSHVSLQAPSGHMWGTF-----RMEREDGYTFDCRIPPFSLE 619
           V+G+ P+L      F Y S   L    G + G+F     ++ R +G  F+  +  F LE
Sbjct: 451 VIGKYPLLTTGQEEFVYESCTPLPDSPGSVEGSFTFVPGKLSRPEGKPFEVTVAAFPLE 509


>08_01_0688 - 6072815-6073918
          Length = 367

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 732 YSSHVSLQAPSGHMWGTFRMEREDGY 655
           ++SH  LQ P+   W  FRM R +G+
Sbjct: 100 FASH-QLQGPASEWWDHFRMNRAEGH 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,857,066
Number of Sequences: 37544
Number of extensions: 308795
Number of successful extensions: 811
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)