Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18i10
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    29   0.78 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   5.5  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   7.3  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    25   9.6  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   9.6  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   9.6  

>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 228 TICISTHNNFNDIYAIERKSEFPTQYLPPT 139
           T  + THN+  DIY++E +++F +Q+L  T
Sbjct: 193 TTALETHNDMQDIYSLE-ETKFVSQHLKDT 221


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 261 EYPDKISNYIITICISTHN 205
           E+P K+SN++  +C+ + N
Sbjct: 536 EFPQKLSNHLYNLCVKSSN 554


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = -3

Query: 435 KLFEDFL-CFFKLDLFNPPTASTLGGPFWFHKACRRSSQTSKREALLLIYQRIGTATH*E 259
           K+ E+F   FF+L     PT + +   FW   A     Q S R+A    + ++  +T  +
Sbjct: 228 KVREEFRKFFFELGFEEMPTNNFVESGFWNFDALFVPQQHSARDAQDTFFLKVPASTD-K 286

Query: 258 YPDKISNYIITICISTHNNFNDIYAIERKSEF 163
            PD    Y+  +  +TH N  +   I  ++ F
Sbjct: 287 LPD--PEYVARV-KATHENGGETKGIGYRAPF 315


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 777 PREMSSRSQNNWLQFPGRNGRSDFTYPDEVTRR 679
           P    S S+  WL +P   G  D + P+  TR+
Sbjct: 136 PYSKYSNSEKGWLCYPCSRGAEDRSVPELRTRK 168


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 258 YPDKISNYIITICISTHNNFNDI-YAIERKSEFPTQYL 148
           Y D  +N +  + ++TH N+ D+  A+  K      YL
Sbjct: 833 YSDDTNNGVFDLVLTTHTNYTDMARAVANKLNVDPNYL 870


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 746 TGYNFPAEMDGVILPTRTRSQDAVPPVNTSRYNNPEAKSKAQ 621
           +GY FP +  G  +P +   +   PP ++S+       SK +
Sbjct: 217 SGYIFPFQRVGATVPKKRLVETETPPPSSSKLKEDYKDSKRE 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,397,013
Number of Sequences: 5004
Number of extensions: 70413
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)