Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18i08
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 28 1.1
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 27 2.6
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 27 3.4
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc... 26 4.5
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 26 4.5
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 4.5
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 5.9
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 7.9
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 7.9
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 25 7.9
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 25 7.9
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 25 7.9
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma... 25 7.9
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 408 IGSRNSGRGIQRDRIPTRHHARVGRRQHYPFFGRRCCENVIQPQHYWVDCGV-YDFGFDS 584
IGS+N G+ ++ PT + R+ PF RC I H D V +D FDS
Sbjct: 60 IGSQNLRIGLASNKTPTTVPMVIARKMRAPFAQERCLLKDI--CHVNEDGNVAFDSEFDS 117
Query: 585 N 587
N
Sbjct: 118 N 118
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 517 VKMLSNPSITGSTVGSMTSVLTRTPSSGSGYV*TSWRGFTSG 642
V ++SNP S TSV++ S+G V + W SG
Sbjct: 355 VPIISNPLFKSPAPYSPTSVISNHSSTGKSLVISEWAYLASG 396
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +1
Query: 316 SMPAILLFPSTL--LLCICAGVRLSGTCSELGLLGREIAGGVSNVTVSPLVTTPGLAEDS 489
S P+I+ P T ++ I + SGTC + G + A + +V P V P + S
Sbjct: 383 SDPSIVSDPRTARNIVSIPHQIHFSGTCYSVAAGGWQSAALAISESVLPEVNVPPITTFS 442
Query: 490 IILFSVDGVVKMLSNPS 540
II S ++ L+ P+
Sbjct: 443 IIRPSRVPALRFLAAPA 459
>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 302
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 519 HNTVDRKKDNAVFGQPWRGDEWGYGHV 439
HN K+ V+ GDE GYGHV
Sbjct: 226 HNWGTEKESGPVYHNGNDGDEKGYGHV 252
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 519 ENVIQPQHYWVDCGVYDFGFDSNSVLRVRIRVNFLEGLHVR 641
E+++QP+H V C DF N +L++ + + +G ++
Sbjct: 208 ESLVQPKHLKVACATTDFSM-QNVLLQIGLNLVSSDGFKIQ 247
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 550 STVGSMTSVLTRTPSSGSGYV*TSWRG 630
S++G +T++ + SSGSG SW G
Sbjct: 243 SSIGDLTTITQSSISSGSGSFKPSWDG 269
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -1
Query: 113 SSLIACFVFLTR-AAHASTRDPCTEA 39
SS++ACF F +R H + C EA
Sbjct: 407 SSILACFTFFSRDKVHVEPIEDCNEA 432
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 636 REAPPGSLHVSGPGGRSSSQNRSHRPHSRPSNAGVG*HFHN 514
R P S HV +Q+ H PH+RP + HFHN
Sbjct: 148 RPEPLSSNHVRSCPPFPPTQH--HHPHTRPPHHPPHPHFHN 186
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -1
Query: 482 SANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTP 369
S +PGVV S + + ++P S P +++ +PL+ +P
Sbjct: 138 SFSPGVVASVNPNSNNSPTFYSNPPALSNIPIPLNNSP 175
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 7.9
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -1
Query: 647 VRPDVKPLQEVYTYPDPEDGVRVKTEVIDPTVDPVMLGLDNIFTTPSTEKRI-MLSSANP 471
+RP+ +P+ V P DG V V+D + GL + S E + +SS+NP
Sbjct: 141 LRPETRPVDPVSPVVSPVDGRIVCQGVVDNNRIQHVKGL-----SYSLEALLGGISSSNP 195
Query: 470 GVVTSGDTVTLD 435
VV D +T D
Sbjct: 196 LVVNFEDEITPD 207
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 7.9
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -3
Query: 672 AGSATALXSPAGREAPPGSLHVSGPG-GRSSSQNRSHRPHSRPSNAGVG*HFHNT 511
+ S L PAGR GS + G G S N+SH + +G G H NT
Sbjct: 192 SSSGGLLLKPAGRI---GSSPIPGHGFWIESFDNKSHSSTCAVATSGTGEHISNT 243
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +1
Query: 412 GREIAGGVSNVTVSPLVTTPGLAEDSIILFSVDGVVKMLSNPSITGSTVGSMTSVLTRTP 591
G+ + G + TV G E +IL + DGV ++ +P GS+ V+
Sbjct: 388 GKTLVSGSGDRTVCLWDVEAG--EQKLILHTDDGVTTVMFSPDGQFIAAGSLDKVIRIWT 445
Query: 592 SSGS 603
SSG+
Sbjct: 446 SSGT 449
>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 521 FTTPSTEKRIMLSSANPGVVTSGDTVTLDTPPAISRPNRPNSL 393
+ T I+LS PG T D+ P I P++PNS+
Sbjct: 175 YITSPLRHPILLSETEPGTPTKNDS-----PAYIGLPSQPNSI 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,343
Number of Sequences: 5004
Number of extensions: 55861
Number of successful extensions: 207
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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