Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18i08
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0352 + 7749902-7751788,7752547-7752615 32 0.38
01_06_1623 - 38716606-38717424 30 2.0
11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832 28 6.1
12_02_0372 + 18212948-18213821,18213887-18214030,18214128-182142... 28 8.1
10_08_1025 - 22391267-22391767,22392641-22392736,22392838-223931... 28 8.1
04_04_1166 - 31427523-31428154,31428888-31429020 28 8.1
03_06_0763 + 36081546-36081669,36081755-36082170,36082280-360823... 28 8.1
03_02_0004 - 4869853-4871106 28 8.1
02_04_0137 + 20137615-20138223 28 8.1
02_02_0238 + 8163922-8164362,8165008-8165118,8165205-8165249,816... 28 8.1
>03_02_0352 + 7749902-7751788,7752547-7752615
Length = 651
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = -1
Query: 605 PDPEDGVRVKTEVIDPTVDPVMLGLDNIFTTPSTEKRIMLSSANPGVVTSGDTVTLDTPP 426
P+P G + V+ P +DP +T + +ML G + D V TPP
Sbjct: 61 PNPSSGAASSSSVVLPPIDPAPHISSQFYTFTAESHALMLRCVLAGRPAAADEVRSATPP 120
Query: 425 AI 420
++
Sbjct: 121 SV 122
>01_06_1623 - 38716606-38717424
Length = 272
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 494 IMLSSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPA 366
++ S +P T+ +TL PP R RP S V L+ TP+
Sbjct: 17 VLQSIGHPIPATAVPDITLPVPPGERRTTRPESETVYLNFTPS 59
>11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832
Length = 165
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 639 GREAPPGSLHVSGP-GGRSSSQNRSHRPHSRP-SNAGVG 529
G APP S H + P G SS+ R+ P SRP S + VG
Sbjct: 49 GDSAPPPSGHRTPPHGAGSSTPQRNKDPASRPRSQSAVG 87
>12_02_0372 +
18212948-18213821,18213887-18214030,18214128-18214273,
18214854-18214862
Length = 390
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = -1
Query: 512 PSTEKRIMLSSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQIHNNKVLGNS 333
P ++ + S+A P + + V T P RP +P S P Q H ++V +
Sbjct: 57 PPPPQQQLTSTAPPRPIVISEPVRKPTQPH-PRPKQPTKPPPSSSTQPQQRHQSQVKKHI 115
Query: 332 KIAGIEIST 306
AG+++ +
Sbjct: 116 SSAGLQVES 124
>10_08_1025 -
22391267-22391767,22392641-22392736,22392838-22393106,
22393257-22393431,22393503-22393718,22393819-22393926,
22394020-22394544,22394631-22394819,22394924-22395041,
22395172-22395437,22395521-22395658
Length = 866
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -1
Query: 593 DGVRVKTEVIDPTVDPVM-LGLDNIF--TTPSTEKRIMLSSANPGVVTSGDTVTLDTPPA 423
D ++V DP+ P++ LG IF T+PS +SS+ +G+ T TPP
Sbjct: 734 DAIQVTMSGEDPSYIPLLPLGFA-IFPATSPSPAAAPTISSSTTTTTGNGNGETSSTPPR 792
Query: 422 ISRPNRPNS 396
S N N+
Sbjct: 793 NSSSNNNNA 801
>04_04_1166 - 31427523-31428154,31428888-31429020
Length = 254
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 488 LSSANPGVVTSGDTVTLDTPPAI 420
LSS NPGV+T + V TPP +
Sbjct: 182 LSSQNPGVITIANAVFGSTPPIL 204
>03_06_0763 +
36081546-36081669,36081755-36082170,36082280-36082339,
36082466-36083101
Length = 411
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 524 IFTTPSTEKRIMLSSANPGVVTSGDTVTLDTPPAISRPNRPN 399
I +TP+ E R S N TSG ++ D P + N P+
Sbjct: 273 ITSTPTEETRQRFSRENHADNTSGPSIVHDRSPVLQNQNLPS 314
>03_02_0004 - 4869853-4871106
Length = 417
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +1
Query: 226 PSGWGSTGVNPVPPSMR----LS*LNMPLLGVLISMPAIL 333
PSGW + GVN P+M L+ + P G L+++P +L
Sbjct: 85 PSGWVAWGVNKDAPAMTGARVLAAFSDPSTGALLALPFLL 124
>02_04_0137 + 20137615-20138223
Length = 202
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -3
Query: 672 AGSATALXSPAGREAPPGSLHVSGPGGRSS 583
A +A A AG+EAP G V+GP G SS
Sbjct: 16 AAAAGASQVIAGQEAPAGGDVVAGPAGTSS 45
>02_02_0238 +
8163922-8164362,8165008-8165118,8165205-8165249,
8166066-8166138,8166215-8166327,8166430-8166489,
8167287-8167334,8167422-8167490,8167618-8167679,
8167771-8167828
Length = 359
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 639 GREAPPGSLHVSGPGGRSSSQNRSHRPHSRPSN 541
G A G L V G GGR SS + S +P N
Sbjct: 113 GAGAGAGQLQVGGGGGRDSSSDGSSNGGGQPQN 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,445,666
Number of Sequences: 37544
Number of extensions: 432549
Number of successful extensions: 1624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1620
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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