Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18i08
(692 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF145284-1|AAD51932.1| 482|Homo sapiens RNA-binding protein iso... 37 0.079
AB014560-1|BAA31635.2| 490|Homo sapiens KIAA0660 protein protein. 36 0.18
X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen pr... 33 0.97
X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col... 33 0.97
BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein. 33 0.97
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen... 33 0.97
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein. 33 0.97
BC114493-1|AAI14494.1| 1514|Homo sapiens MAPKBP1 protein protein. 32 1.7
BC011731-1|AAH11731.1| 449|Homo sapiens GTPase activating prote... 32 2.2
AF053535-1|AAC95292.1| 449|Homo sapiens ras-GAP/RNA binding pro... 32 2.2
AF051311-1|AAC15705.1| 449|Homo sapiens Ras-GAP SH3 binding pro... 32 2.2
L13258-1|AAA36354.1| 639|Homo sapiens renal sodium-dependent ph... 31 3.0
BC053349-1|AAH53349.1| 639|Homo sapiens solute carrier family 3... 31 3.0
BC050385-1|AAH50385.1| 639|Homo sapiens solute carrier family 3... 31 3.0
AK096088-1|BAC04699.1| 632|Homo sapiens protein ( Homo sapiens ... 31 3.0
Y13247-1|CAA73697.1| 940|Homo sapiens FB19 protein protein. 30 6.8
>AF145284-1|AAD51932.1| 482|Homo sapiens RNA-binding protein
isoform G3BP-2a protein.
Length = 482
Score = 36.7 bits (81), Expect = 0.079
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = -1
Query: 632 KPLQEVYTYPDPEDGVRVKTEVIDPTVDPVML-GLDNIFTTPSTEKRIMLSSANPGVVTS 456
+PL+E P+PE KTE + P V+ L L+ TTP + + L P +
Sbjct: 187 EPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKAFSW 246
Query: 455 GDTVTLDTPPA--ISRPNRPNSLQVPLS 378
+ + PP+ +S P+ ++ P+S
Sbjct: 247 ASVTSKNLPPSGTVSSSGIPSHVKAPVS 274
>AB014560-1|BAA31635.2| 490|Homo sapiens KIAA0660 protein protein.
Length = 490
Score = 35.5 bits (78), Expect = 0.18
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = -1
Query: 632 KPLQEVYTYPDPEDGVRVKTEVIDPTVDPVML-GLDNIFTTPSTEKRIMLSSANPGVVTS 456
+PL+E P+PE KTE + P V+ L L+ TTP + + L P +
Sbjct: 195 EPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKAFSW 254
Query: 455 GDTVTLDTPPA--ISRPNRPNSLQVPLS 378
+ + PP+ +S P ++ P+S
Sbjct: 255 ASVTSKNLPPSGTVSSSGIPPHVKAPVS 282
>X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen
protein.
Length = 1078
Score = 33.1 bits (72), Expect = 0.97
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 645 PAGREAPPGSLHVSGPGGRSSSQNRSHRPHSR 550
P+G PPG++ SGP G+ R RP R
Sbjct: 64 PSGPPGPPGAIGPSGPAGKDGESGRPGRPGDR 95
>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3
collagen protein.
Length = 1466
Score = 33.1 bits (72), Expect = 0.97
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 645 PAGREAPPGSLHVSGPGGRSSSQNRSHRPHSR 550
P+G PPG++ SGP G+ R RP R
Sbjct: 211 PSGPPGPPGAIGPSGPAGKDGESGRPGRPGER 242
>BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein.
Length = 1163
Score = 33.1 bits (72), Expect = 0.97
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 645 PAGREAPPGSLHVSGPGGRSSSQNRSHRPHSR 550
P+G PPG++ SGP G+ R RP R
Sbjct: 211 PSGPPGPPGAIGPSGPAGKDGESGRPGRPGER 242
>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
alpha 1 chain protein.
Length = 1466
Score = 33.1 bits (72), Expect = 0.97
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 645 PAGREAPPGSLHVSGPGGRSSSQNRSHRPHSR 550
P+G PPG++ SGP G+ R RP R
Sbjct: 211 PSGPPGPPGAIGPSGPAGKDGESGRPGRPGER 242
>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
Length = 1466
Score = 33.1 bits (72), Expect = 0.97
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 645 PAGREAPPGSLHVSGPGGRSSSQNRSHRPHSR 550
P+G PPG++ SGP G+ R RP R
Sbjct: 211 PSGPPGPPGAIGPSGPAGKDGESGRPGRPGER 242
>BC114493-1|AAI14494.1| 1514|Homo sapiens MAPKBP1 protein protein.
Length = 1514
Score = 32.3 bits (70), Expect = 1.7
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = -1
Query: 512 PSTEKRIMLSSANPGVVTSGDTVTLD----TPPAISRPNRPNSLQVPLSLTPAQIHNNKV 345
P L + +PG + S + D PPA RP+RP+S Q P + + A+I +
Sbjct: 1204 PQERHEASLQAPSPGALLSREIEAQDGLGSLPPADGRPSRPHSYQNPTTSSMAKISRSIS 1263
Query: 344 LGNS 333
+G +
Sbjct: 1264 VGEN 1267
>BC011731-1|AAH11731.1| 449|Homo sapiens GTPase activating protein
(SH3 domain) binding protein 2 protein.
Length = 449
Score = 31.9 bits (69), Expect = 2.2
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = -1
Query: 632 KPLQEVYTYPDPEDGVRVKTEVIDPTVDPVML-GLDNIFTTPSTEKRIMLSSANPGVVTS 456
+PL+E P+PE KTE + P V+ L L+ TTP + + L P
Sbjct: 187 EPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKPRVE 246
Query: 455 GDTVTLDTPPAISRPNRP 402
PP + R RP
Sbjct: 247 AKPEVQSQPPRV-REQRP 263
>AF053535-1|AAC95292.1| 449|Homo sapiens ras-GAP/RNA binding
protein G3BP2 protein.
Length = 449
Score = 31.9 bits (69), Expect = 2.2
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = -1
Query: 632 KPLQEVYTYPDPEDGVRVKTEVIDPTVDPVML-GLDNIFTTPSTEKRIMLSSANPGVVTS 456
+PL+E P+PE KTE + P V+ L L+ TTP + + L P
Sbjct: 187 EPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKPRVE 246
Query: 455 GDTVTLDTPPAISRPNRP 402
PP + R RP
Sbjct: 247 AKPEVQSQPPRV-REQRP 263
>AF051311-1|AAC15705.1| 449|Homo sapiens Ras-GAP SH3 binding
protein protein.
Length = 449
Score = 31.9 bits (69), Expect = 2.2
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = -1
Query: 632 KPLQEVYTYPDPEDGVRVKTEVIDPTVDPVML-GLDNIFTTPSTEKRIMLSSANPGVVTS 456
+PL+E P+PE KTE + P V+ L L+ TTP + + L P
Sbjct: 187 EPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKPRVE 246
Query: 455 GDTVTLDTPPAISRPNRP 402
PP + R RP
Sbjct: 247 AKPEVQSQPPRV-REQRP 263
>L13258-1|AAA36354.1| 639|Homo sapiens renal sodium-dependent
phosphate transporter protein.
Length = 639
Score = 31.5 bits (68), Expect = 3.0
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -1
Query: 524 IFTTPSTEKRIMLSSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQIHNNKV 345
I T P T+ I L + + +GD +L I P+SLQ P S++ A+ ++++
Sbjct: 269 IITEPFTKLIIQLDESVITSIATGDE-SLRNHSLIQIWCHPDSLQAPTSMSRAEANSSQT 327
Query: 344 LGNS 333
LGN+
Sbjct: 328 LGNA 331
>BC053349-1|AAH53349.1| 639|Homo sapiens solute carrier family 34
(sodium phosphate), member 1 protein.
Length = 639
Score = 31.5 bits (68), Expect = 3.0
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -1
Query: 524 IFTTPSTEKRIMLSSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQIHNNKV 345
I T P T+ I L + + +GD +L I P+SLQ P S++ A+ ++++
Sbjct: 269 IITEPFTKLIIQLDESVITSIATGDE-SLRNHSLIQIWCHPDSLQAPTSMSRAEANSSQT 327
Query: 344 LGNS 333
LGN+
Sbjct: 328 LGNA 331
>BC050385-1|AAH50385.1| 639|Homo sapiens solute carrier family 34
(sodium phosphate), member 1 protein.
Length = 639
Score = 31.5 bits (68), Expect = 3.0
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -1
Query: 524 IFTTPSTEKRIMLSSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQIHNNKV 345
I T P T+ I L + + +GD +L I P+SLQ P S++ A+ ++++
Sbjct: 269 IITEPFTKLIIQLDESVITSIATGDE-SLRNHSLIQIWCHPDSLQAPTSMSRAEANSSQT 327
Query: 344 LGNS 333
LGN+
Sbjct: 328 LGNA 331
>AK096088-1|BAC04699.1| 632|Homo sapiens protein ( Homo sapiens
cDNA FLJ38769 fis, clone KIDNE2015556, highly similar to
RENAL SODIUM-DEPENDENT PHOSPHATE TRANSPORT PROTEIN 2. ).
Length = 632
Score = 31.5 bits (68), Expect = 3.0
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -1
Query: 524 IFTTPSTEKRIMLSSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQIHNNKV 345
I T P T+ I L + + +GD +L I P+SLQ P S++ A+ ++++
Sbjct: 262 IITEPFTKLIIQLDESVITSIATGDE-SLRNHSLIQIWCHPDSLQAPTSMSRAEANSSQT 320
Query: 344 LGNS 333
LGN+
Sbjct: 321 LGNA 324
>Y13247-1|CAA73697.1| 940|Homo sapiens FB19 protein protein.
Length = 940
Score = 30.3 bits (65), Expect = 6.8
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = -3
Query: 639 GREAPPGSLHVSGPGGRSSSQNRSHRPHSRPSNAGVG*HFHNTVDRKKDNAVFGQP---W 469
G A G GPGG S + HRPH P + G H + V + + GQP
Sbjct: 822 GMGAGGGHRPHEGPGG-SMGGSGGHRPHEGPGHGGPHGHRLHDVPGHRGHDHRGQPPHEH 880
Query: 468 RGDEWGYGHVG 436
RG + G GH G
Sbjct: 881 RGHD-GPGHGG 890
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,294,504
Number of Sequences: 237096
Number of extensions: 2313966
Number of successful extensions: 13363
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13272
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -