Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18i08
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr... 31 0.78
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein. 31 0.78
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p... 30 1.4
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p... 30 1.4
AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein... 30 1.4
Z98853-1|CAB57901.1| 262|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF040656-2|ABC71795.1| 206|Caenorhabditis elegans Hypothetical ... 30 1.8
AF040656-1|AAB95048.2| 234|Caenorhabditis elegans Hypothetical ... 30 1.8
AF024499-1|AAT48620.1| 941|Caenorhabditis elegans Hypothetical ... 30 1.8
AF016452-12|AAB66011.1| 309|Caenorhabditis elegans Hypothetical... 30 1.8
U50193-4|AAP68917.1| 492|Caenorhabditis elegans Nuclear pore co... 29 2.4
U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co... 29 2.4
AF039047-11|AAB94230.1| 354|Caenorhabditis elegans Prion-like-(... 29 2.4
AF016452-13|AAB66010.1| 303|Caenorhabditis elegans Hypothetical... 29 2.4
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr... 29 3.2
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 25 4.5
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 28 5.5
U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical pr... 28 5.5
AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical ... 28 5.5
Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical pr... 28 7.3
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 28 7.3
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 28 7.3
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 7.3
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 28 7.3
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 27 9.6
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 27 9.6
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 27 9.6
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 27 9.6
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 27 9.6
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 27 9.6
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 27 9.6
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 27 9.6
AF016676-5|AAG24100.1| 473|Caenorhabditis elegans Cytochrome p4... 27 9.6
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 27 9.6
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 31.9 bits (69), Expect = 0.45
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Frame = -1
Query: 671 PAQRPLFXVRPDVKPLQEVYTYPDPEDGVRVKTEVIDPTVDPVMLGLDNIFTTPSTEKRI 492
P +P+ ++P V+P+Q V + P P + RV T PV+ + +I T + +
Sbjct: 1476 PVAQPVQPIQP-VQPVQSVQSLPQPAEIPRVVVPQSPGTPQPVVPQV-SIVTPQAPQPTA 1533
Query: 491 MLSSANPGVV-----TSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQIHNNKVLGNSKI 327
+SA+ G + T+ T T TP S P + ++ P VLG +I
Sbjct: 1534 AATSASTGPIAPEPTTAAPTTTETTPLPPSLAPHPPAAHAAKTVIPT-YKAEPVLGREQI 1592
>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical
protein K04G2.8b protein.
Length = 1188
Score = 31.1 bits (67), Expect = 0.78
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -1
Query: 578 KTEVIDPTVDPVMLGLDNIFTTPSTEKRIMLSSANPGVVTSGDTVTLDTPPAISRPNRPN 399
+ + + PT D + + + T S +R L S NPG V + +LDT SR P
Sbjct: 590 EADPVPPTDDDLDIPTSTVMGTRSNSER-SLGSMNPGSVMTNWNSSLDTAANSSRALSPV 648
Query: 398 SL-QVPLSLTP-AQIHN 354
S +P S T AQ+ N
Sbjct: 649 SYNDIPASPTMCAQVFN 665
>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical
protein K04G2.8a protein.
Length = 1186
Score = 31.1 bits (67), Expect = 0.78
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -1
Query: 578 KTEVIDPTVDPVMLGLDNIFTTPSTEKRIMLSSANPGVVTSGDTVTLDTPPAISRPNRPN 399
+ + + PT D + + + T S +R L S NPG V + +LDT SR P
Sbjct: 588 EADPVPPTDDDLDIPTSTVMGTRSNSER-SLGSMNPGSVMTNWNSSLDTAANSSRALSPV 646
Query: 398 SL-QVPLSLTP-AQIHN 354
S +P S T AQ+ N
Sbjct: 647 SYNDIPASPTMCAQVFN 663
>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
Length = 1186
Score = 31.1 bits (67), Expect = 0.78
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -1
Query: 578 KTEVIDPTVDPVMLGLDNIFTTPSTEKRIMLSSANPGVVTSGDTVTLDTPPAISRPNRPN 399
+ + + PT D + + + T S +R L S NPG V + +LDT SR P
Sbjct: 588 EADPVPPTDDDLDIPTSTVMGTRSNSER-SLGSMNPGSVMTNWNSSLDTAANSSRALSPV 646
Query: 398 SL-QVPLSLTP-AQIHN 354
S +P S T AQ+ N
Sbjct: 647 SYNDIPASPTMCAQVFN 663
>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 458 SGDTVTLDTPPAISRPNRPNSLQV-PLSLTPAQIHNNK 348
SG D P+ SRPN PN+ Q+ PL+ TP I NK
Sbjct: 9 SGYPTPRDEIPSTSRPNSPNNAQLYPLTSTP--IRGNK 44
>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 458 SGDTVTLDTPPAISRPNRPNSLQV-PLSLTPAQIHNNK 348
SG D P+ SRPN PN+ Q+ PL+ TP I NK
Sbjct: 9 SGYPTPRDEIPSTSRPNSPNNAQLYPLTSTP--IRGNK 44
>AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein 2
protein.
Length = 298
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 675 RAGSATALXSPAGREAPPGSLHVSGPGGRSSSQNRSHRPHSRPSNAGV 532
+AG A + P G PPG VSGP G N+ + P + GV
Sbjct: 186 KAG-ANGMQGPPGMMGPPGRQGVSGPKGAPGRINQINGPAGPAGHKGV 232
>Z98853-1|CAB57901.1| 262|Caenorhabditis elegans Hypothetical
protein R08A2.1 protein.
Length = 262
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 609 VSGPGGRSSSQNRSHRPHSRPSNAGVG*HFHNTVDRKKDNAVFG 478
V GPGG R+ P S+P AG + T+ ++AVFG
Sbjct: 98 VFGPGGGEGGPPRAPAPGSKPGMAGTQDPNYQTLAGLNNDAVFG 141
>AF040656-2|ABC71795.1| 206|Caenorhabditis elegans Hypothetical
protein Y8G1A.1b protein.
Length = 206
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 609 VSGPGGRSSSQNRSHRPHSRPSNAGVG*HFHNTVDRKKDNAVFG 478
V GPGG R+ P S+P AG + T+ ++AVFG
Sbjct: 40 VFGPGGGEGGPPRAPAPGSKPGMAGTQDPNYQTLAGLNNDAVFG 83
>AF040656-1|AAB95048.2| 234|Caenorhabditis elegans Hypothetical
protein Y8G1A.1a protein.
Length = 234
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 609 VSGPGGRSSSQNRSHRPHSRPSNAGVG*HFHNTVDRKKDNAVFG 478
V GPGG R+ P S+P AG + T+ ++AVFG
Sbjct: 68 VFGPGGGEGGPPRAPAPGSKPGMAGTQDPNYQTLAGLNNDAVFG 111
>AF024499-1|AAT48620.1| 941|Caenorhabditis elegans Hypothetical
protein F42G2.4a protein.
Length = 941
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 496 LFSVDGVVKMLSNPSITGSTVGSMTSVLTRTPSSGSGYV*TSWR 627
LFSV+ L NP I G + M V R GS YV W+
Sbjct: 750 LFSVEKFTVNLRNPEIVGQLLTYMDPVSLRKIEFGSEYVNRPWK 793
>AF016452-12|AAB66011.1| 309|Caenorhabditis elegans Hypothetical
protein T05H4.5 protein.
Length = 309
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 305 PSNGMFNYESLMDGGTGLTPVL 240
P N +F + S++ GGTG+TP+L
Sbjct: 175 PKNRVFKHLSMIAGGTGITPML 196
>U50193-4|AAP68917.1| 492|Caenorhabditis elegans Nuclear pore
complex protein protein10, isoform a protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Frame = -1
Query: 530 DNIFTTPSTEKRIMLSSANPGVVTSGDTV------TLDTPPAISRPNRPNSLQVPLSLTP 369
D+ F P K ++S +P V S D + + PP+++R R ++ +SLT
Sbjct: 81 DSSFIIPPISK--VMSDLSPAVTRSADVTKDLNYTSKEAPPSLARGLRNSTFNPNMSLTN 138
Query: 368 AQIHNNKVLGNSKIAGIEISTPSNGMFN 285
+H + L + + ++ S NG N
Sbjct: 139 RSVHESSALDKTIDSALDAS--MNGTSN 164
>U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore
complex protein protein10, isoform b protein.
Length = 1189
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Frame = -1
Query: 530 DNIFTTPSTEKRIMLSSANPGVVTSGDTV------TLDTPPAISRPNRPNSLQVPLSLTP 369
D+ F P K ++S +P V S D + + PP+++R R ++ +SLT
Sbjct: 81 DSSFIIPPISK--VMSDLSPAVTRSADVTKDLNYTSKEAPPSLARGLRNSTFNPNMSLTN 138
Query: 368 AQIHNNKVLGNSKIAGIEISTPSNGMFN 285
+H + L + + ++ S NG N
Sbjct: 139 RSVHESSALDKTIDSALDAS--MNGTSN 164
>AF039047-11|AAB94230.1| 354|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 51
protein.
Length = 354
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 407 RPNSLQVPLSLTPAQIHNNKVLGNSKIAGIEISTPSNG-MFNYESLMDGGTG 255
+PN +P+S+ P QI ++++ + + P G + + MDG G
Sbjct: 145 QPNGQNIPMSIMPNQIPQHRIIHQGQPQQAQQQQPQQGNQLTHMNQMDGNVG 196
>AF016452-13|AAB66010.1| 303|Caenorhabditis elegans Hypothetical
protein T05H4.4 protein.
Length = 303
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 305 PSNGMFNYESLMDGGTGLTPVL 240
P N F + S++ GGTG+TP+L
Sbjct: 169 PKNRFFKHLSMIAGGTGITPML 190
>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical protein
K08E4.1 protein.
Length = 1208
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = -1
Query: 689 EPYDNVPAQRPLFXVR-PDVKPLQEVYTYPDPEDGVRVKTEVIDPTVDPVMLGLDNIFTT 513
E YDN PA+ P F R P + +P+ +V+ ++ D T P + +
Sbjct: 971 EAYDNAPARTPAFVSRTPGYDTYENSSPTYEPDAATKVEEDIGD-TSSPTYDSPPHSYVV 1029
Query: 512 PSTEKRIMLSSANPG 468
P+ ML+ A PG
Sbjct: 1030 PT--PGAMLNPATPG 1042
>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical protein
K08E4.1 protein.
Length = 1208
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = -1
Query: 689 EPYDNVPAQRPLFXVR-PDVKPLQEVYTYPDPEDGVRVKTEVIDPTVDPVMLGLDNIFTT 513
E YDN PA+ P F R P + +P+ +V+ ++ D T P + +
Sbjct: 971 EAYDNAPARTPAFVSRTPGYDTYENSSPTYEPDAATKVEEDIGD-TSSPTYDSPPHSYVV 1029
Query: 512 PSTEKRIMLSSANPG 468
P+ ML+ A PG
Sbjct: 1030 PT--PGAMLNPATPG 1042
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
protein F54D11.2 protein.
Length = 1145
Score = 24.6 bits (51), Expect(2) = 4.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 510 RCCENVIQPQHYWVDCGVYDFGFDSNSVLRVRIRVNFLEGL 632
R C+ V Q Y +C V G+ +++ L + N +EG+
Sbjct: 816 RICDKVRQKNKYRPNCNVVLVGYGASTYL-IHRAANLVEGI 855
Score = 22.2 bits (45), Expect(2) = 4.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 447 RIPTRHHARVGR 482
R P RHHAR+ R
Sbjct: 769 RAPPRHHARIFR 780
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 606 SGPGGRSSSQNRSHRPHSRPSNAGVG*HFHNTVDRKKDNAVFGQP-WRGDEWGYGHVG 436
+G GGR +RS+R H R N G D + +P R D +G GH G
Sbjct: 8 AGGGGREYHDDRSNRDH-RHGNGGSDAGQRRREDHNSSYQSYRRPDGRQDSYGGGHQG 64
>U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical
protein F53B3.6 protein.
Length = 321
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -3
Query: 627 PPGSLHVSGPGG-RSSSQNRSH 565
PPG + SG GG RSSS +RSH
Sbjct: 232 PPGGVVSSGGGGYRSSSHHRSH 253
>AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical
protein Y66D12A.12 protein.
Length = 343
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -1
Query: 515 TPSTEKRIMLSSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQIHN 354
TP T K I +SS PG ++ + + P I + RP+S + S TP H+
Sbjct: 101 TPGTAKIIAVSSRRPGSLSQHELRGEERSPRIKK--RPSSKAMKTSDTPLTGHD 152
>Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical
protein W03G11.1b protein.
Length = 279
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -3
Query: 669 GSATALXSPAGREAPPGSLHVSGPGGRSSSQNRSHRPHSRPSNAG 535
G + SPAG PG+ GP G + R +P P + G
Sbjct: 195 GGSNVAPSPAGEPGAPGAQGPKGPPGAAGRPGRDGQP-GAPGDQG 238
>Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical
protein W03G11.1a protein.
Length = 332
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -3
Query: 669 GSATALXSPAGREAPPGSLHVSGPGGRSSSQNRSHRPHSRPSNAG 535
G + SPAG PG+ GP G + R +P P + G
Sbjct: 248 GGSNVAPSPAGEPGAPGAQGPKGPPGAAGRPGRDGQP-GAPGDQG 291
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = +1
Query: 502 SVDGVVKMLSNPSITGSTVGSMTSVLTRTPSSGSGYV*TSWRGFTSGRTXKSGR*AGT 675
S G+ + S PS + + S LT TPS +S TSG T SG AGT
Sbjct: 485 STSGMSTLTSEPSPSSTQSSGAQSTLT-TPSPNPSQSTSSLESSTSGATTSSGS-AGT 540
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = +1
Query: 502 SVDGVVKMLSNPSITGSTVGSMTSVLTRTPSSGSGYV*TSWRGFTSGRTXKSGR*AGT 675
S G+ + S PS + + S LT TPS +S TSG T SG AGT
Sbjct: 692 STSGMSTLTSEPSPSSTQSSGAQSTLT-TPSPNPSQSTSSLESSTSGATTSSGS-AGT 747
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = +1
Query: 502 SVDGVVKMLSNPSITGSTVGSMTSVLTRTPSSGSGYV*TSWRGFTSGRTXKSGR*AGT 675
S G+ + S PS + + S LT TPS +S TSG T SG AGT
Sbjct: 692 STSGMSTLTSEPSPSSTQSSGAQSTLT-TPSPNPSQSTSSLESSTSGATTSSGS-AGT 747
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 27.9 bits (59), Expect = 7.3
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = +1
Query: 430 GVSNVTVSPLVTTPGLAEDSIILFSVDGVVKMLSNPSITGSTVGSMTSVLTRTPSSGSGY 609
G+S V+ S L T G + S + S D V S S GST +++ T +PS+GS
Sbjct: 791 GISTVSGSSLSTISG-STGSTVSGSSDMTVSTGSTSS-PGSTESTVSGASTMSPSTGSS- 847
Query: 610 V*TSWRG 630
V TS G
Sbjct: 848 VETSTSG 854
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 501 KKDNAVFGQPWRGDEWGYGH 442
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = -3
Query: 675 RAGSATALXSPAGREAPPG---SLHVSGPGGRSSSQNRSHRPHSRPSNAGVG 529
+AG + SP G+ PG S GP GR+ R+ P N G G
Sbjct: 197 QAGQTRSAPSPPGQPGQPGEPGSPGEPGPDGRAGHPGRNGPPGPPGDNGGQG 248
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = -3
Query: 675 RAGSATALXSPAGREAPPG---SLHVSGPGGRSSSQNRSHRPHSRPSNAGVG 529
+AG + SP G+ PG S GP GR+ R+ P N G G
Sbjct: 197 QAGQTRSAPSPPGQPGQPGEPGSPGEPGPDGRAGHPGRNGPPGPPGDNGGQG 248
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 501 KKDNAVFGQPWRGDEWGYGH 442
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 501 KKDNAVFGQPWRGDEWGYGH 442
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 501 KKDNAVFGQPWRGDEWGYGH 442
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 211 YACACPSGWGSTGVNPV 261
Y C C SGW T ++P+
Sbjct: 105 YTCKCRSGWSDTSLDPL 121
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 211 YACACPSGWGSTGVNPV 261
Y C C SGW T ++P+
Sbjct: 689 YTCKCRSGWSDTSLDPL 705
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 211 YACACPSGWGSTGVNPV 261
Y C C SGW T ++P+
Sbjct: 105 YTCKCRSGWSDTSLDPL 121
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 211 YACACPSGWGSTGVNPV 261
Y C C SGW T ++P+
Sbjct: 689 YTCKCRSGWSDTSLDPL 705
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 501 KKDNAVFGQPWRGDEWGYGH 442
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNYVFGQSGAGNNWAKGH 105
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 501 KKDNAVFGQPWRGDEWGYGH 442
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNYVFGQSGAGNNWAKGH 105
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 27.5 bits (58), Expect = 9.6
Identities = 26/79 (32%), Positives = 31/79 (39%)
Frame = +1
Query: 412 GREIAGGVSNVTVSPLVTTPGLAEDSIILFSVDGVVKMLSNPSITGSTVGSMTSVLTRTP 591
G G S + S + TTPG + S S S PS + S TS P
Sbjct: 522 GPSTTSGPSTTSGSTVSTTPGASTTSGSTQSTTSGPSTSSGPSTASRSTVSTTS----GP 577
Query: 592 SSGSGYV*TSWRGFTSGRT 648
S+ SG TS TSG T
Sbjct: 578 STTSGPSTTSGPSTTSGST 596
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +1
Query: 340 PSTLLLCICAGVRLSGTCSELGLLGREIAGGVSNVTVSPLVTTPGLAEDSIILFS-VDGV 516
PST+ C+ + + T + E+ V+ T +P+VTT + + V
Sbjct: 195 PSTVAPVTCSTMPMPTTQPLVTSTAPEVTTTVAQTTTAPIVTTANTTTQGVTTTAGVTTT 254
Query: 517 VKMLSNPSITGSTVGSMTSVLTR 585
V N ++ +T T+ T+
Sbjct: 255 VTRAQNSTLAATTTAPSTNTTTQ 277
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 211 YACACPSGWGSTGVNPV 261
Y C C SGW T ++P+
Sbjct: 689 YTCKCRSGWSDTSLDPL 705
>AF016676-5|AAG24100.1| 473|Caenorhabditis elegans Cytochrome p450
family protein 33C7 protein.
Length = 473
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 376 RLSGTCSELGLLGREIAGGVSNVTVSPLVTTPGLAE 483
+LS TC +L G +N T+ ++ TPG+ E
Sbjct: 290 QLSNTCLDLWFAGLSTTNTTANWTICYVMNTPGVLE 325
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 27.5 bits (58), Expect = 9.6
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = -1
Query: 509 STEKRIMLSSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQIHNNKVLGNSK 330
S+ + I S+ANPG TSG TV + T + S PN+ ++T ++ +S
Sbjct: 874 SSTQPIASSTANPGSSTSGTTV-VTTQGSSSTQTNPNTGSTGSTVTQPSAFSS-TSASSS 931
Query: 329 IAGIEISTPSN 297
I ST +N
Sbjct: 932 TQPIASSTTAN 942
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,481,174
Number of Sequences: 27780
Number of extensions: 333353
Number of successful extensions: 1613
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1587
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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