Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18i08
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 357  QQQSTREQQNSRHRDQHA*QRHV*LRKPHGRGHGV 253
            QQQ  ++QQ  + + Q   Q+    R+  G G G+
Sbjct: 1212 QQQQQQQQQQQQQQQQQQQQQQHQAREREGVGAGI 1246



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 375  HTCTDTQQQSTREQQNSRHRDQ 310
            H+   TQQQ  ++QQ  + + Q
Sbjct: 1495 HSSQKTQQQQPQQQQQQQQQQQ 1516


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 357 QQQSTREQQNSRHRDQHA*QRH 292
           QQQ  ++QQ  + + Q   Q+H
Sbjct: 442 QQQQQQQQQQQQQQQQQQQQQH 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,439
Number of Sequences: 438
Number of extensions: 4013
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)