Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18i06
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451... 31 1.1
03_06_0377 + 33498939-33499814 30 1.4
02_01_0642 - 4803464-4805665,4806231-4806320 30 1.4
12_01_0087 + 692180-693361,695920-696150 29 2.5
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 28 5.8
08_02_0703 - 20188489-20190246 28 5.8
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 28 5.8
>03_01_0614 +
4515515-4515540,4515988-4516209,4516681-4516768,
4517084-4517123,4517259-4517305,4517464-4517584,
4517931-4518091
Length = 234
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/102 (25%), Positives = 43/102 (42%)
Frame = -3
Query: 506 GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMA 327
G+I L K + L + E F N+L N + +E R+ET QLA
Sbjct: 74 GIIARLKDKSVDELQRLLKDKEAYNAFFNSLDQVKT----QNNLRDELRKETVQLARENL 129
Query: 326 DIAQDVIAKPNNPQLLHSLAVCALGGEKYAFLRAQKRSLNRS 201
+ Q ++ N ++ + + A ++ A L QK + RS
Sbjct: 130 EKEQRILELRNQCTIIRTTELAA-AQDRLAELERQKDEIMRS 170
>03_06_0377 + 33498939-33499814
Length = 291
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 9 FRSCSTARASMSWFSSQVLQQRDLVVLGFVLV 104
F++C SM W SQV ++ L LGF L+
Sbjct: 253 FQTCQAPEKSMPWSYSQVFRESQLQGLGFSLI 284
>02_01_0642 - 4803464-4805665,4806231-4806320
Length = 763
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = -3
Query: 524 KMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQ 345
K+++ ++E + +L+ LAE N +++ L + LVQ T L + +
Sbjct: 475 KVESIQIAVQEKDSELSETQRRLAEVNSEVVELKQLLDSKEDQLVQVRTELQDKEQHIQT 534
Query: 344 LANRM 330
L N++
Sbjct: 535 LQNKL 539
>12_01_0087 + 692180-693361,695920-696150
Length = 470
Score = 29.5 bits (63), Expect = 2.5
Identities = 36/141 (25%), Positives = 52/141 (36%), Gaps = 2/141 (1%)
Frame = -3
Query: 446 NEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSLA 267
N I FA+ ++T V A L L N + Q++ A+ L
Sbjct: 84 NRPKIAFADEIITYELDSVTALQSLCSWNGSVGSLINDRWSLVQELEAETRKKDSDIMLL 143
Query: 266 VCALGGEKYAFLRAQKR--SLNRSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRNQYK 93
L G K A R K+ S S+ +V P+A+ L KV T
Sbjct: 144 RRELDGLKSANSRLNKQISSSKPSVNHHKDYSIVLKKLTTPSAVLELFKVAST------- 196
Query: 92 AKHNKITLLQNLTREPAHRCP 30
+ H+ L+ +L P HRCP
Sbjct: 197 SVHDFAELIFSLISSPDHRCP 217
>11_01_0334 +
2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 51 SSQVLQQRDLVVLGFVLVSRQRFFN-FVKHVHGVGHIVAAKYHVGRTQAFNATVKTALLR 227
+ +V++Q D V L ++S + FN F+K V + + VG N +
Sbjct: 366 AQEVMRQEDAVELQKKIMSAKFDFNDFLKQSQNVAKMGSMSRVVGMIPGMNKVTPAQIRE 425
Query: 228 AQKRILF 248
A+KR+ F
Sbjct: 426 AEKRLAF 432
>08_02_0703 - 20188489-20190246
Length = 585
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 155 VPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREPAHRCPCSRA 18
VP + L +V + R+ KA + L NLT EP +R P RA
Sbjct: 276 VPRLLAALRRVLHS-KRHTPKAHADAAAALANLTNEPENRIPIVRA 320
>02_01_0369 +
2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 28.3 bits (60), Expect = 5.8
Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 5/142 (3%)
Frame = -3
Query: 494 ELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMADIAQ 315
EL L F E+ E E+ H + + L L + E +NR AD+
Sbjct: 502 ELTATLTFEKEARKEVEEQREHLCSENKRVLSNLSDLELSLASLKEEMNDGSNRCADLEC 561
Query: 314 DV-IAKPNNPQLLHSLAVCALGGEKY----AFLRAQKRSLNRSIKRLGSSDVVFSSDYVP 150
++ K N + L LA C E L A +IK+L ++ S++
Sbjct: 562 ELRSTKENMERTLVELASCRNSLETLQNDNLELSANSSFEKEAIKKLEEDNLCLSNEKQG 621
Query: 149 NAMNVLNKVKETLPRNQYKAKH 84
++ L++ KE L + K +H
Sbjct: 622 LLLD-LSETKEELHLSYAKHEH 642
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,085,281
Number of Sequences: 37544
Number of extensions: 368504
Number of successful extensions: 1110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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