Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18i06
(664 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ100955-1|AAZ08961.1| 119|Homo sapiens immunoglobulin heavy ch... 32 2.1
AY392963-1|AAS85902.1| 147|Homo sapiens immunoglobulin heavy ch... 32 2.1
AF343401-1|AAK51398.1| 106|Homo sapiens psoriasis vulgaris immu... 31 2.8
DQ100992-1|AAZ08998.1| 120|Homo sapiens immunoglobulin heavy ch... 31 3.7
AY392970-1|AAS85909.1| 144|Homo sapiens immunoglobulin heavy ch... 31 3.7
AY392969-1|AAS85908.1| 144|Homo sapiens immunoglobulin heavy ch... 31 3.7
AY941958-1|AAY33307.1| 121|Homo sapiens anti-rabies virus immun... 31 4.9
AY941920-1|AAY33269.1| 121|Homo sapiens anti-rabies virus immun... 31 4.9
AF460501-1|AAM87872.1| 72|Homo sapiens immunoglobulin heavy ch... 31 4.9
BC033075-1|AAH33075.1| 888|Homo sapiens ETAA1 protein protein. 30 6.4
AY941923-1|AAY33272.1| 121|Homo sapiens anti-rabies virus immun... 30 6.4
AF460393-1|AAM87764.1| 63|Homo sapiens immunoglobulin heavy ch... 30 6.4
DQ454453-1|ABE66537.1| 85|Homo sapiens immunoglobulin heavy ch... 30 8.5
BC052988-1|AAH52988.1| 980|Homo sapiens retinoic acid induced 1... 30 8.5
AY941987-1|AAY33335.1| 121|Homo sapiens anti-rabies virus immun... 30 8.5
AY317139-1|AAP84319.1| 983|Homo sapiens RAI14 isoform protein. 30 8.5
AF209897-1|AAF40165.1| 106|Homo sapiens immunoglobulin heavy ch... 30 8.5
AF155135-1|AAF44722.1| 980|Homo sapiens novel retinal pigment e... 30 8.5
AB037755-1|BAA92572.1| 989|Homo sapiens KIAA1334 protein protein. 30 8.5
>DQ100955-1|AAZ08961.1| 119|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 119
Score = 31.9 bits (69), Expect = 2.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = -1
Query: 295 TIPNCYIRWPCVR*AEKSMRFCARKSAVLTVALNAWVRPT 176
+I Y++W ++ ++ M +CAR++ V + ++ W + T
Sbjct: 74 SISTAYLQWSSLKTSDSGMYYCARRTTVPSAGMDVWGQGT 113
>AY392963-1|AAS85902.1| 147|Homo sapiens immunoglobulin heavy chain
protein.
Length = 147
Score = 31.9 bits (69), Expect = 2.1
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -1
Query: 295 TIPNCYIRWPCVR*AEKSMRFCARKSAVLTVALNA---WVRPTWYLAATMCPT 146
+I Y++W ++ ++ +M +CAR+ V V+ +A W R T ++ PT
Sbjct: 86 SISTAYLQWSSLKASDTAMYYCARQLVVAAVSYDAFDLWGRGTLVTVSSASPT 138
>AF343401-1|AAK51398.1| 106|Homo sapiens psoriasis vulgaris
immunoglobulin heavy chain protein.
Length = 106
Score = 31.5 bits (68), Expect = 2.8
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -1
Query: 295 TIPNCYIRWPCVR*AEKSMRFCARKSAVLTVALNAWVRPTW 173
+I Y++W ++ ++ +M +CAR S+ ++ W + TW
Sbjct: 64 SISTAYLQWSSLKASDTAMYYCARHSSYSQWLVDYWGQGTW 104
>DQ100992-1|AAZ08998.1| 120|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 120
Score = 31.1 bits (67), Expect = 3.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 220 FCARRNAYFSPPNAHTANECSSWG 291
+CAR + +S PNAH + C WG
Sbjct: 95 YCARDSHPYSRPNAHRISACDYWG 118
>AY392970-1|AAS85909.1| 144|Homo sapiens immunoglobulin heavy chain
protein.
Length = 144
Score = 31.1 bits (67), Expect = 3.7
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = -1
Query: 295 TIPNCYIRWPCVR*AEKSMRFCARKSAVLTVALNAWVRPTWYLAATMCPT 146
+I Y++W ++ ++ +M +CAR+S L+ W + T ++ PT
Sbjct: 86 SISTVYLQWSSLKASDTAMYYCARRSEYTGHDLDYWGQGTQVTVSSASPT 135
>AY392969-1|AAS85908.1| 144|Homo sapiens immunoglobulin heavy chain
protein.
Length = 144
Score = 31.1 bits (67), Expect = 3.7
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 280 YIRWPCVR*AEKSMRFCARKSAVLTVALNAWVRPTWYLAATMCPT 146
Y++W ++ ++ +M FCAR+SA + W + T ++ PT
Sbjct: 91 YLQWSSLKASDTAMYFCARQSAYSYGLFDYWGQGTLVTVSSASPT 135
>AY941958-1|AAY33307.1| 121|Homo sapiens anti-rabies virus
immunoglobulin heavy chain variable region protein.
Length = 121
Score = 30.7 bits (66), Expect = 4.9
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -1
Query: 295 TIPNCYIRWPCVR*AEKSMRFCARKSAVL-TVALNAWVRPT 176
+I Y++W ++ ++ +M FCAR+ AV T A + W + T
Sbjct: 75 SISTAYLQWSSLKASDTAMYFCARRIAVAGTDAFDIWGQGT 115
>AY941920-1|AAY33269.1| 121|Homo sapiens anti-rabies virus
immunoglobulin heavy chain variable region protein.
Length = 121
Score = 30.7 bits (66), Expect = 4.9
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -1
Query: 295 TIPNCYIRWPCVR*AEKSMRFCARKSAVL-TVALNAWVRPT 176
+I Y++W +R ++ +M +CAR+ AV T A + W + T
Sbjct: 75 SISTAYLQWSSLRASDTAMYYCARRLAVAGTDAFDIWGQGT 115
>AF460501-1|AAM87872.1| 72|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 72
Score = 30.7 bits (66), Expect = 4.9
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -1
Query: 301 NLTIPNCYIRWPCVR*AEKSMRFCARKS----AVLTVALNAWVRPTW 173
N +I Y++W ++ ++ +M +CAR V+ A+N W W
Sbjct: 24 NKSISTAYLQWSSLKASDTAMYYCARSGRKDIVVVPAAINNWYFDLW 70
>BC033075-1|AAH33075.1| 888|Homo sapiens ETAA1 protein protein.
Length = 888
Score = 30.3 bits (65), Expect = 6.4
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Frame = -3
Query: 386 ANTMLNEARRETAQLAN-RMADIAQDVIAKPNNPQLLHSLAVCALGGEKYAFLRAQKRSL 210
+ T+ N +R T+ A R + + QD+ +K + +L+ + + K + K S
Sbjct: 421 SKTVKNTSRANTSPDARLRDSKVLQDLSSKTYDRELIDAEYRFSPNSNK-----SNKLST 475
Query: 209 NRSIKRLGSSDVVFSSDYVPNAM--NVLNKVKETLPRNQYKAKHNKITLLQNLTREPAHR 36
+K SS+ + D + N + + L K+KE + N +A K L + E ++
Sbjct: 476 GNKMKFENSSNKIVIQDEIQNCIVTSNLTKIKEDILTNSTEASERKSALNTRYSNEQKNK 535
Query: 35 C 33
C
Sbjct: 536 C 536
>AY941923-1|AAY33272.1| 121|Homo sapiens anti-rabies virus
immunoglobulin heavy chain variable region protein.
Length = 121
Score = 30.3 bits (65), Expect = 6.4
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -1
Query: 295 TIPNCYIRWPCVR*AEKSMRFCARKSAVL-TVALNAWVRPT 176
+I Y++W ++ ++ SM +CAR+ AV T A + W + T
Sbjct: 75 SISTAYLQWSSLQASDTSMYYCARRIAVAGTDAFDIWGQGT 115
>AF460393-1|AAM87764.1| 63|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 63
Score = 30.3 bits (65), Expect = 6.4
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = -1
Query: 295 TIPNCYIRWPCVR*AEKSMRFCARKSAVLTVALNAW 188
+I Y++W ++ ++ +M +CAR ++T L+ W
Sbjct: 26 SISTAYLQWSSLKASDTAMYYCARHQGLITGDLDYW 61
>DQ454453-1|ABE66537.1| 85|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 85
Score = 29.9 bits (64), Expect = 8.5
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -1
Query: 295 TIPNCYIRWPCVR*AEKSMRFCARKSAVLTVALNAWVRPT 176
+I Y++W ++ ++ +M +CAR A+ + A + W + T
Sbjct: 40 SISTAYLQWSSLKASDTAMYYCARLRALRSSAFDIWGQGT 79
>BC052988-1|AAH52988.1| 980|Homo sapiens retinoic acid induced 14
protein.
Length = 980
Score = 29.9 bits (64), Expect = 8.5
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = -3
Query: 524 KMDTNY-GVIEELNKKLAFASESLAEANEKIIHFANALVT--ANAGLVQANTMLNEARRE 354
+M ++Y VIE +NK+ AF E EA E+I+ + L + +A M R
Sbjct: 578 EMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRM 637
Query: 353 TAQLANRMADIAQ 315
+L ++++++Q
Sbjct: 638 IDELNKQVSELSQ 650
>AY941987-1|AAY33335.1| 121|Homo sapiens anti-rabies virus
immunoglobulin heavy chain variable region protein.
Length = 121
Score = 29.9 bits (64), Expect = 8.5
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -1
Query: 295 TIPNCYIRWPCVR*AEKSMRFCARKSAVL-TVALNAWVRPT 176
+I Y++W ++ ++ +M FCAR+ AV T A + W + T
Sbjct: 75 SISTAYLQWSGLKASDTAMYFCARRIAVAGTDAFDIWGQGT 115
>AY317139-1|AAP84319.1| 983|Homo sapiens RAI14 isoform protein.
Length = 983
Score = 29.9 bits (64), Expect = 8.5
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = -3
Query: 524 KMDTNY-GVIEELNKKLAFASESLAEANEKIIHFANALVT--ANAGLVQANTMLNEARRE 354
+M ++Y VIE +NK+ AF E EA E+I+ + L + +A M R
Sbjct: 581 EMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRM 640
Query: 353 TAQLANRMADIAQ 315
+L ++++++Q
Sbjct: 641 IDELNKQVSELSQ 653
>AF209897-1|AAF40165.1| 106|Homo sapiens immunoglobulin heavy chain
variable region 194-31 protein.
Length = 106
Score = 29.9 bits (64), Expect = 8.5
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = -1
Query: 295 TIPNCYIRWPCVR*AEKSMRFCARKSAVLTVALNAWVRPTW 173
+I Y++W ++ ++ ++ +CAR S+ ++ W + TW
Sbjct: 64 SISTAYLQWSSLKASDTAIYYCARHSSFSQWLVDYWGQGTW 104
>AF155135-1|AAF44722.1| 980|Homo sapiens novel retinal pigment
epithelial cell protein protein.
Length = 980
Score = 29.9 bits (64), Expect = 8.5
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = -3
Query: 524 KMDTNY-GVIEELNKKLAFASESLAEANEKIIHFANALVT--ANAGLVQANTMLNEARRE 354
+M ++Y VIE +NK+ AF E EA E+I+ + L + +A M R
Sbjct: 578 EMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRM 637
Query: 353 TAQLANRMADIAQ 315
+L ++++++Q
Sbjct: 638 IDELNKQVSELSQ 650
>AB037755-1|BAA92572.1| 989|Homo sapiens KIAA1334 protein protein.
Length = 989
Score = 29.9 bits (64), Expect = 8.5
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = -3
Query: 524 KMDTNY-GVIEELNKKLAFASESLAEANEKIIHFANALVT--ANAGLVQANTMLNEARRE 354
+M ++Y VIE +NK+ AF E EA E+I+ + L + +A M R
Sbjct: 587 EMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRM 646
Query: 353 TAQLANRMADIAQ 315
+L ++++++Q
Sbjct: 647 IDELNKQVSELSQ 659
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,185,494
Number of Sequences: 237096
Number of extensions: 1865481
Number of successful extensions: 5354
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5353
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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