Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18h21
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...   159   6e-40
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    37   0.004
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.35 
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.8  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    28   1.8  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    27   3.2  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   4.3  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    26   5.6  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    26   5.6  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    26   5.6  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   7.5  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    26   7.5  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    25   9.9  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   9.9  

>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score =  159 bits (385), Expect = 6e-40
 Identities = 82/219 (37%), Positives = 129/219 (58%)
 Frame = -3

Query: 807  LALNALILAYSQSVLYLDGIKFSDTQATLQSLLLASCFLFISRSKPLKQLSKERPLPNIF 628
            LALN LI AYS SVL+LDGIKF DTQ T+  +L++ CF  +SR++PL+ LSKERP   IF
Sbjct: 997  LALNCLITAYSLSVLHLDGIKFGDTQYTISGMLMSVCFYCVSRARPLETLSKERPQAGIF 1056

Query: 627  NMYTIMTVLSQFAVHFLCLIYLVHEATVRSPGRDNKPKLDMDLAEDEDREFAPDLLNSTV 448
            N Y I +VL QFA+H + LIY+     +     D   K+D+      +  F P LLN+ +
Sbjct: 1057 NTYIIGSVLGQFAIHIVTLIYITRVVYLY---EDPLEKVDL------EETFKPSLLNTAI 1107

Query: 447  YIISMALQISTFAINYRGEPFMQGLKDNKPLLYSIVISGGAVLALAAGIFPDLSNMFEIV 268
            Y++ +  Q+STFAINY+G PF + L +NK + Y ++      +A      P+L+   ++V
Sbjct: 1108 YLLQLIQQVSTFAINYQGRPFREALSENKGMYYGLLGIAFVAIAGVTEFSPELNAKLQLV 1167

Query: 267  YFPPDYRVILVQVLIADMLFAYLVDRFCLFLFGEGRIPK 151
                ++++ L+  ++ D    ++++      F + + PK
Sbjct: 1168 KMAYNFQIQLLATMVVDYAACWIIEELMKKYFRDNK-PK 1205


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
 Frame = -3

Query: 819  CSRSLALNALILAYSQSVLYLDGIKFSDTQATLQSL-LLASCFLFISRSKPLKQLSKERP 643
            C + +AL + I   + S+LY       D Q     L ++    +F+ RS+P  +L+ +RP
Sbjct: 1070 CFQYMALYSAIQFITVSILYTTNSNLGDFQFLFIDLVIILPIAVFMGRSRPYHRLAHKRP 1129

Query: 642  LPNIFNMYTIMTVLSQFAVHFLCLIYLVHEATVR 541
              N+ +   +  ++ Q  +  +C+I  +    VR
Sbjct: 1130 TANLVSKRILSPLIGQIVL--ICIIQYITLRIVR 1161


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 272 ISNMLERSGNIPAARASTAPPDITMLYSNGLLSFKPCMNGSPL*L--IAKVEIC 427
           ISN LER  NI   R +    D  + Y+N LL  K  +N   L L   AK  IC
Sbjct: 96  ISNALERLENIELERQNCMREDGLVKYTNELLLNKETLNNEALKLYSCAKAGIC 149


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 172 EEEQTETVHQIREQHIRYQNLHEYHPIIRWEVYYFEHVGEVREY 303
           E+ + E + QI+ +  R Q LHE     R + YY E + E R +
Sbjct: 52  EDARQEVLQQIQHRKFR-QYLHEREQEARLQEYYLEQLQERRAF 94


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -3

Query: 822  RCSRSLALNALILAYSQSVLYLDGIKFSDTQATLQSLLLA-SCFLFISRSKPLKQLSKER 646
            RC + + L A++       LYL    F+D Q     LL+       +S   P + L+  R
Sbjct: 892  RCFQYMVLCAIVQFSGVFFLYLKNYNFNDNQFLFMDLLIIFPLSAAMSYFDPAQNLTSNR 951

Query: 645  PLPNIF 628
            P   +F
Sbjct: 952  PNSTLF 957


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -3

Query: 288 SNMFEIVYFPPDYRVILVQVLIADMLFAYLVDRFCLFLF 172
           S++ +  Y+  D R++L +VLI  ++ A+L     +F+F
Sbjct: 67  SSLIDDFYYKGDKRLVLSKVLITHIISAFLSFLSAIFVF 105


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 403 LQR*TVHA-RFEGQQTITVQHCDIWRGGACSCSRDIP 296
           L R  VH  R  G Q  T+QHC    G  C C  +IP
Sbjct: 379 LNRSQVHYFRDLGYQHSTIQHCGQEYGCNCDCPFNIP 415


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 53  GQYSEDCYNSFTRMI 97
           GQ+ EDCY SFT ++
Sbjct: 287 GQWYEDCYTSFTDLL 301


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = +2

Query: 623 ILNIFGNGRSLDNCFNGLDLEMNK----KHDAN--NKLCNVAWVSLNLIPSRYN 766
           IL+ FGN +S  N      +E +     + DA+  NK    A V +NLIP+ YN
Sbjct: 825 ILSQFGNDKSFGNAAGQDVIEEDDYETDQQDASISNKSAEDAIVEMNLIPAWYN 878


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -3

Query: 741 SDTQATLQSLLLASCFLFISRSKPLKQLSKERPLPNIFNMYTIMTVLSQFAVHFLCLIY 565
           ++ Q  +Q+L L  C  F S  +PL+    +  L N  +    ++ +++  +  +CL Y
Sbjct: 302 TNEQDFIQNLALFLCAFFSSHLRPLENPENQEVLLNAHSYLLNISRINEREIFKICLEY 360


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 705 ASCFLFISRSKPLKQLSKERPLPNIFN 625
           +S  L I R+   ++  ++RPLPNI N
Sbjct: 112 SSILLTIKRATSSQETKRDRPLPNIRN 138


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +2

Query: 644 GRSLDNCF---NGLDLEMNKKHDANNKLCNVAW 733
           G ++D C    N L   +  K D  +++CN+AW
Sbjct: 311 GGTIDRCLTIHNTLTGRLQNKLDTGSQVCNMAW 343


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 672 PLKQLSKERPLPNIFNMYTIMTVLSQFAVHFLCLIYLVHEATV 544
           P   +SKE+ L  I N +  + +     + FLCL    H ATV
Sbjct: 138 PEAVISKEKHLVYILNSFKPILLKLVSIIRFLCLTMKGHCATV 180


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 176  RNKQKRSTKYANNISAIKTCTSITR*SGGKYTISNMLERSGN 301
            R K+ R +   NNI A+KT   + +    + TI ++ +R+ N
Sbjct: 1369 RLKEHRPSGKENNIPAVKTTEPVLKNIPQRKTIFDLQQRNAN 1410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,404,699
Number of Sequences: 5004
Number of extensions: 73789
Number of successful extensions: 189
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)