Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18h21
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682...   150   2e-36
01_07_0083 + 40970890-40971015,40971886-40971994,40972679-409727...    29   3.4  
01_01_1161 + 9244628-9245748,9247696-9247828,9248233-9248448,924...    28   7.8  

>05_04_0256 - 19465636-19466709,19467649-19467765,19468168-19468279,
            19469019-19469167,19469378-19469449,19469544-19469609,
            19471945-19472073,19474539-19474647,19475225-19475304,
            19475408-19475533,19475607-19475657,19475738-19475920,
            19476019-19476105,19476184-19476294,19476692-19476796,
            19477513-19477678,19477769-19477941,19478022-19478094,
            19479472-19479655,19479759-19480203
          Length = 1203

 Score =  150 bits (363), Expect = 2e-36
 Identities = 82/218 (37%), Positives = 123/218 (56%)
 Frame = -3

Query: 807  LALNALILAYSQSVLYLDGIKFSDTQATLQSLLLASCFLFISRSKPLKQLSKERPLPNIF 628
            L LN L  AY  SV+YLDG+K  D QAT+  +  A+ FLFIS ++PL+ LS ERP PNIF
Sbjct: 979  LGLNCLATAYVLSVMYLDGVKLGDVQATISGVFTAAFFLFISHARPLQTLSAERPHPNIF 1038

Query: 627  NMYTIMTVLSQFAVHFLCLIYLVHEATVRSPGRDNKPKLDMDLAEDEDREFAPDLLNSTV 448
              Y  +++L QFA+H   LI  V+EAT   P    +P          D EF P+L+N+  
Sbjct: 1039 CAYVFLSILGQFAMHLFFLISAVNEATKYMPEECIEP----------DSEFHPNLVNTVS 1088

Query: 447  YIISMALQISTFAINYRGEPFMQGLKDNKPLLYSIVISGGAVLALAAGIFPDLSNMFEIV 268
            Y+++M +Q++TFA+NY G PF Q + +NKP  Y++  +      + + +F DL++  ++ 
Sbjct: 1089 YMVNMMIQVATFAVNYMGHPFNQSITENKPFKYALYAAVAFFTVITSDMFRDLNDYMKLE 1148

Query: 267  YFPPDYRVILVQVLIADMLFAYLVDRFCLFLFGEGRIP 154
              P   R  L+   I      Y  +R   + F  G++P
Sbjct: 1149 PLPEGMRGKLMLWAILMFCGCYGWERILRWAF-PGKMP 1185


>01_07_0083 +
           40970890-40971015,40971886-40971994,40972679-40972790,
           40972944-40973100,40973609-40973761,40974143-40974292,
           40974803-40974999,40975446-40975473
          Length = 343

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 456 CSVNLERILDLRLQLNPYLISVYCPGQEISL*P 554
           CS   E I    +Q +PYLI V CP   + L P
Sbjct: 101 CSTQAENICFWFIQNSPYLICVICPEDHLHLSP 133


>01_01_1161 +
           9244628-9245748,9247696-9247828,9248233-9248448,
           9249802-9249957,9250788-9250979,9251118-9251234,
           9251822-9252193
          Length = 768

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 164 PSPKRNKQKRSTKYANNISAIKTCTSITR*SGGKYTISNMLERSGNIPAARASTAP 331
           PSP  +   R T  A +I  ++  T + R SGG      +   +  +PA R   AP
Sbjct: 249 PSPSPSTSPR-THRAGSILRLRLSTRVQRSSGGSKKKKKLAFAAAGVPADREELAP 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,144,592
Number of Sequences: 37544
Number of extensions: 482482
Number of successful extensions: 1123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)