Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18h21
(824 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr... 237 5e-63
U41552-7|AAU05560.1| 1174|Caenorhabditis elegans Hypothetical pr... 35 0.062
U41552-6|AAU05561.1| 1203|Caenorhabditis elegans Hypothetical pr... 35 0.062
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ... 34 0.14
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related... 34 0.14
AF040647-5|AAR30206.1| 140|Caenorhabditis elegans Hypothetical ... 30 2.3
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca... 30 2.3
U51995-8|AAA96076.1| 331|Caenorhabditis elegans Dystroglycan pr... 28 7.1
Z48245-2|CAA88291.1| 309|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z37139-10|CAA85495.1| 309|Caenorhabditis elegans Hypothetical p... 28 9.3
U95074-2|AAB94648.1| 309|Caenorhabditis elegans cyclophilin iso... 28 9.3
U36581-1|AAC47131.1| 309|Caenorhabditis elegans cyclophilin iso... 28 9.3
AL132943-8|CAB81985.3| 453|Caenorhabditis elegans Hypothetical ... 28 9.3
AL132943-7|CAC14394.1| 589|Caenorhabditis elegans Hypothetical ... 28 9.3
AF031834-1|AAC13670.1| 589|Caenorhabditis elegans GLY4 protein. 28 9.3
>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical protein
C10C6.6 protein.
Length = 1178
Score = 237 bits (581), Expect = 5e-63
Identities = 122/217 (56%), Positives = 155/217 (71%), Gaps = 3/217 (1%)
Frame = -3
Query: 807 LALNALILAYSQSVLYLDGIKFSDTQATLQSLLLASCFLFISRSKPLKQLSKERPLPNIF 628
LALNAL+ AYS S LYLDG+KFSDTQAT+Q LLLA+CFLFIS+SKPLK LS++RP+ NIF
Sbjct: 972 LALNALVSAYSLSALYLDGVKFSDTQATIQGLLLAACFLFISKSKPLKTLSRQRPMANIF 1031
Query: 627 NMYTIMTVLSQFAVHFLCLIYLV---HEATVRSPGRDNKPKLDMDLAEDEDREFAPDLLN 457
N YT++TV QF VHF CL+Y+V HEA N K +DL + +F P++LN
Sbjct: 1032 NAYTLLTVTLQFIVHFSCLLYIVGLAHEA--------NTEKAPVDL----EAKFTPNILN 1079
Query: 456 STVYIISMALQISTFAINYRGEPFMQGLKDNKPLLYSIVISGGAVLALAAGIFPDLSNMF 277
+TVYIISMALQ+ TFA+NYRG PFM+ L +NK +LYSI+ SGGAV LA+G DL F
Sbjct: 1080 TTVYIISMALQVCTFAVNYRGRPFMESLFENKAMLYSIMFSGGAVFTLASGQATDLMIQF 1139
Query: 276 EIVYFPPDYRVILVQVLIADMLFAYLVDRFCLFLFGE 166
E+V P R L+ + AD++ Y++DR FL G+
Sbjct: 1140 ELVVLPEALRNALLMCVTADLVICYIIDRGLNFLLGD 1176
>U41552-7|AAU05560.1| 1174|Caenorhabditis elegans Hypothetical protein
K07E3.7a protein.
Length = 1174
Score = 35.1 bits (77), Expect = 0.062
Identities = 44/212 (20%), Positives = 83/212 (39%), Gaps = 2/212 (0%)
Frame = -3
Query: 816 SRSLALNALILAYSQSVLYLDGIKFSDTQATLQSLLLASCF-LFISRSKPLKQLSKERPL 640
S+ +A +L S +LY DG SD Q L+L + LF+ ++ ++LS P
Sbjct: 910 SKYMAAYSLNEFLSVMLLYNDGTNISDGQFLYIDLVLITLVALFLGNTEASRKLSGIPPP 969
Query: 639 PNIFNMYTIMTVLSQFAVHFLCLIYLVHEATVRSPGRDNKPKLDMDLAEDEDREFAPDLL 460
+ +V Q + F + VR + E+ + ++
Sbjct: 970 RRLATSAFYFSVFGQ--MFFNIITQTTGYLLVRGQS--------WYVPNPEELDNTTTMI 1019
Query: 459 NSTVYIISMALQISTFAINYRGEPFMQGLKDNKPLLYSIVISGGAVLALAAGIFPDLSNM 280
+TV+ S + + + +G P+ + + N L I + G + + L N+
Sbjct: 1020 GTTVFFTSCCMYLGYAFVYSKGHPYRRSVFTNWLLCGIIFVIGAINMVMIFTNMGFLMNL 1079
Query: 279 FEIVYFP-PDYRVILVQVLIADMLFAYLVDRF 187
VY P R IL+ + +A + + L + F
Sbjct: 1080 MGFVYVPSTSMRFILLAISLAGVFLSLLYEHF 1111
>U41552-6|AAU05561.1| 1203|Caenorhabditis elegans Hypothetical protein
K07E3.7b protein.
Length = 1203
Score = 35.1 bits (77), Expect = 0.062
Identities = 44/212 (20%), Positives = 83/212 (39%), Gaps = 2/212 (0%)
Frame = -3
Query: 816 SRSLALNALILAYSQSVLYLDGIKFSDTQATLQSLLLASCF-LFISRSKPLKQLSKERPL 640
S+ +A +L S +LY DG SD Q L+L + LF+ ++ ++LS P
Sbjct: 939 SKYMAAYSLNEFLSVMLLYNDGTNISDGQFLYIDLVLITLVALFLGNTEASRKLSGIPPP 998
Query: 639 PNIFNMYTIMTVLSQFAVHFLCLIYLVHEATVRSPGRDNKPKLDMDLAEDEDREFAPDLL 460
+ +V Q + F + VR + E+ + ++
Sbjct: 999 RRLATSAFYFSVFGQ--MFFNIITQTTGYLLVRGQS--------WYVPNPEELDNTTTMI 1048
Query: 459 NSTVYIISMALQISTFAINYRGEPFMQGLKDNKPLLYSIVISGGAVLALAAGIFPDLSNM 280
+TV+ S + + + +G P+ + + N L I + G + + L N+
Sbjct: 1049 GTTVFFTSCCMYLGYAFVYSKGHPYRRSVFTNWLLCGIIFVIGAINMVMIFTNMGFLMNL 1108
Query: 279 FEIVYFP-PDYRVILVQVLIADMLFAYLVDRF 187
VY P R IL+ + +A + + L + F
Sbjct: 1109 MGFVYVPSTSMRFILLAISLAGVFLSLLYEHF 1140
>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
repeats, ras-likedomain, kinase protein 1 protein.
Length = 2395
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +2
Query: 263 KYTISNMLERSGNIPAARASTAPPDITMLYSNGLLSFKPCMNGSPL*LIAKVEICNAIDI 442
+ T+ +ML SGN PPD ML LS K C PL + VE C ++I
Sbjct: 905 RLTLLSMLNLSGN---TAIKELPPDYGMLSRLWSLSLKGCSLKEPLESMVNVENCKTVEI 961
Query: 443 I 445
+
Sbjct: 962 V 962
>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
kinase protein.
Length = 2393
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +2
Query: 263 KYTISNMLERSGNIPAARASTAPPDITMLYSNGLLSFKPCMNGSPL*LIAKVEICNAIDI 442
+ T+ +ML SGN PPD ML LS K C PL + VE C ++I
Sbjct: 903 RLTLLSMLNLSGN---TAIKELPPDYGMLSRLWSLSLKGCSLKEPLESMVNVENCKTVEI 959
Query: 443 I 445
+
Sbjct: 960 V 960
>AF040647-5|AAR30206.1| 140|Caenorhabditis elegans Hypothetical
protein F54D12.9 protein.
Length = 140
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 723 LQSLLLASCFLFISRSKPLKQLSKERPLPNIFNMYTIMTVLSQ 595
L +L++ CF+ I+ SK L L + P+P + Y LSQ
Sbjct: 7 LAIVLISCCFVTITESKCLANLPESTPVPGDCSSYPTAKFLSQ 49
>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
protein 4 protein.
Length = 2325
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 306 GIFPDLSNMFEIVYFPPDYRVILVQVLIADMLF 208
G+ P L N IVYFP D R I+ L D +F
Sbjct: 214 GLSPSLQNTLSIVYFPTD-RTIIESTLPHDEIF 245
>U51995-8|AAA96076.1| 331|Caenorhabditis elegans Dystroglycan
protein 3 protein.
Length = 331
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 687 ISRSKPLKQLSKERPLPNIFNMYTIMTVLS-QFAVHFL 577
+S KP K +S R LP+I N+ T+MT F+++FL
Sbjct: 246 VSNDKP-KNISHIRLLPDILNVRTVMTKKKIFFSIYFL 282
>Z48245-2|CAA88291.1| 309|Caenorhabditis elegans Hypothetical
protein T27D1.1 protein.
Length = 309
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 762 YLDGIKFSDTQATLQSLLLASCFLFISRSKPLK 664
Y+D + D L +L+++C + + KPLK
Sbjct: 150 YIDNLAVDDKSKPLAKVLISNCGELVKKKKPLK 182
>Z37139-10|CAA85495.1| 309|Caenorhabditis elegans Hypothetical
protein T27D1.1 protein.
Length = 309
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 762 YLDGIKFSDTQATLQSLLLASCFLFISRSKPLK 664
Y+D + D L +L+++C + + KPLK
Sbjct: 150 YIDNLAVDDKSKPLAKVLISNCGELVKKKKPLK 182
>U95074-2|AAB94648.1| 309|Caenorhabditis elegans cyclophilin
isoform 9 protein.
Length = 309
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 762 YLDGIKFSDTQATLQSLLLASCFLFISRSKPLK 664
Y+D + D L +L+++C + + KPLK
Sbjct: 150 YIDNLAVDDKSKPLAKVLISNCGELVKKKKPLK 182
>U36581-1|AAC47131.1| 309|Caenorhabditis elegans cyclophilin
isoform 9 protein.
Length = 309
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 762 YLDGIKFSDTQATLQSLLLASCFLFISRSKPLK 664
Y+D + D L +L+++C + + KPLK
Sbjct: 150 YIDNLAVDDKSKPLAKVLISNCGELVKKKKPLK 182
>AL132943-8|CAB81985.3| 453|Caenorhabditis elegans Hypothetical
protein Y116F11B.12b protein.
Length = 453
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 642 LPNIFNMYTIMTVLSQFAVHFLCLIYLVH-EATVRSPGRDNKPKLDMD 502
LP + M T+ TVL+ + L IY+ +++R PGR P +D
Sbjct: 2 LPRMLKMKTVGTVLAVIWLFGLAFIYVQSTSSSLRPPGRHPPPLPQLD 49
>AL132943-7|CAC14394.1| 589|Caenorhabditis elegans Hypothetical
protein Y116F11B.12a protein.
Length = 589
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 642 LPNIFNMYTIMTVLSQFAVHFLCLIYLVH-EATVRSPGRDNKPKLDMD 502
LP + M T+ TVL+ + L IY+ +++R PGR P +D
Sbjct: 2 LPRMLKMKTVGTVLAVIWLFGLAFIYVQSTSSSLRPPGRHPPPLPQLD 49
>AF031834-1|AAC13670.1| 589|Caenorhabditis elegans GLY4 protein.
Length = 589
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 642 LPNIFNMYTIMTVLSQFAVHFLCLIYLVH-EATVRSPGRDNKPKLDMD 502
LP + M T+ TVL+ + L IY+ +++R PGR P +D
Sbjct: 2 LPRMLKMKTVGTVLAVIWLFGLAFIYVQSTSSSLRPPGRHPPPLPQLD 49
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,881,946
Number of Sequences: 27780
Number of extensions: 415113
Number of successful extensions: 1095
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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