Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18h21
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.5  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.4  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +1

Query: 229 NLHEYHPIIRWEVYYFEHVGEVREYPGCKSKHRPSRYHN 345
           +L EY+P + W++         + YP C   + P  + N
Sbjct: 191 DLREYYPSVEWDILGVPAERHKKYYPCCDEPY-PDIFFN 228


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
 Frame = +1

Query: 124 SKGRVS*LRLRNPPFPEEEQTETVHQIREQHIRYQNLHEY-HPIIRWEVYYFEHVGEVRE 300
           S+ R    R R P        +T+H        Y N + Y +     ++YY  ++  + +
Sbjct: 67  SRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQ 126

Query: 301 YP 306
            P
Sbjct: 127 IP 128


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 432 PLI*YKRCCSVNLERILDLRLQLNPY 509
           P++ + +   +N+ER+  +  QLN Y
Sbjct: 486 PMVNHSKSSRINIERMKQVYQQLNKY 511


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,877
Number of Sequences: 438
Number of extensions: 5482
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)