Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18h20
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual    63   4e-11
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    34   0.026
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.046
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    29   0.75 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    28   1.7  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    27   2.3  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    27   2.3  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    27   2.3  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    27   2.3  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   4.0  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    27   4.0  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   5.3  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   7.0  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    25   9.2  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   9.2  

>SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 35/99 (35%), Positives = 53/99 (53%)
 Frame = -1

Query: 728 EELLTHLAEQGKENLGMVMVFTLVSAGQEWLNETWDKVKKEREERILAKQKADEEAELKR 549
           E L   +A+  +E LGM M+F+L S  +E  N    +  +   + I  + + + E E K+
Sbjct: 81  ERLKQVVAQNAEECLGMAMIFSLCSVAKEETNAILIEQSQRETQAIEERHRKEAEQENKK 140

Query: 548 FEGTRVTVESFLAWRKQFEIDMGIPAKREREAKDKNKLT 432
           F GT VTVESF  W+K F+       K E+E+K K  L+
Sbjct: 141 FHGTPVTVESFTEWKKGFDAWRNEQLKLEQESKLKEALS 179


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 33.9 bits (74), Expect = 0.026
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = -1

Query: 779 PIIEIDNEENFDNIVDKEELLTHLAEQGKENLGMVMVFTLVSAGQEWLNETWDKVKKE-- 606
           P+I++ N EN  N   +  LL  L  + K+ LG  M+F L S  Q++LN+    +  +  
Sbjct: 78  PVIKLQNGENVLNSQIRF-LLDKLDTKAKDLLGEEMIFELASIVQDYLNDWQSDLSSQFA 136

Query: 605 --REERILAKQKADEEAEL 555
              EER +  +   E AE+
Sbjct: 137 SLEEERAVQLKHDRERAEV 155


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.046
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
 Frame = -1

Query: 632  ETWDKVKKEREERI-LAKQKADEEAELKRFEGTRVTVESFLA-WRKQFEIDMGIPAKRER 459
            E +   K E EER    K++   E   K   G + T  S +A +R + E+      K++ 
Sbjct: 1229 EMYSIAKAENEERFEKEKRRIMSEDRDKLIRGRQKT--SIVAKYRNKRELPEDSDDKQDT 1286

Query: 458  EAKDKNKLTGRELFLQDTTLNESDLKFLDDGDAVKVDE 345
             +KDKN L   +  ++D +  E D K  DD +   +D+
Sbjct: 1287 ASKDKNSLETIDEKMEDASKIEGDAKTGDDNEMEDLDK 1324


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
 Frame = -1

Query: 776 IIEIDNEENFDNIVDKEELL-THLAEQGKENLGMVMVF---TLVSAGQEWLNETWDKVK- 612
           ++E+DNEE+ D    +E L+ THL E  ++   +   +    L+S+G    +  + +V  
Sbjct: 323 VVEVDNEEHSDFPKLREMLIRTHLEELKEQTNKLYEAYRTERLLSSGISQDHSVFREVNP 382

Query: 611 --KEREERILAKQKADE-EAELKRFEGTRVTVESFLAWRKQFEIDMGIPAKREREAKDKN 441
             K  EER L ++K  + EAE+K     +V  +      KQ E ++    +  + A +K 
Sbjct: 383 SAKLEEERALHEEKLMKMEAEMKTIFSQKVQEKEDRL--KQSENELRTRHREMKAALEKQ 440

Query: 440 K 438
           K
Sbjct: 441 K 441


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = -1

Query: 623 DKVKKEREERI-LAKQKADEEAELKRFEGTRVTVES 519
           +K KKEREE++ L ++ AD++AE+   E +  T E+
Sbjct: 407 EKKKKEREEQVRLLQESADKDAEMN--EASTATSEN 440



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -1

Query: 536 RVTVESFLAWRKQFEIDMGIPAKREREAKDKNKLTGRELFLQDTTLNESDLKFL 375
           R   E+ + W++   ++  +  K EREA D+ K   +E  L+++      L FL
Sbjct: 684 RAMRETMVFWKRNERVERDLRKKAEREALDRAK---KEEELRESRRQARKLDFL 734


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 106 LHLLQYNNCIDLFTKFNITNQSYKH*FTISLW 201
           L L+ +      F  F++ N  ++H FT++ W
Sbjct: 280 LFLISFGYFFTFFAVFSVINYGFRHKFTVAWW 311


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 106 LHLLQYNNCIDLFTKFNITNQSYKH*FTISLW 201
           L L+ +      F  F++ N  ++H FT++ W
Sbjct: 280 LFLISFGYFFTFFAVFSVINYGFRHKFTVAWW 311


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 106 LHLLQYNNCIDLFTKFNITNQSYKH*FTISLW 201
           L L+ +      F  F++ N  ++H FT++ W
Sbjct: 280 LFLISFGYFFTFFAVFSVINYGFRHKFTVAWW 311


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 106 LHLLQYNNCIDLFTKFNITNQSYKH*FTISLW 201
           L L+ +      F  F++ N  ++H FT++ W
Sbjct: 280 LFLISFGYFFTFFAVFSVINYGFRHKFTVAWW 311


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 715 HILLNRVKKTWEWSWYSH*CQLDKSGLMRLGIKLRKSVKK 596
           H+ +N+  +  +WS+Y+H  +  +  L+ +   LR + KK
Sbjct: 183 HLKVNKYTEPLDWSYYAHNLERIEDLLVEMEENLRPTKKK 222


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -1

Query: 695 KENLGMVMVFTLVSAGQEWLNETWDKVKKEREERIL--AKQKADEEAELKRFEGTRVTVE 522
           KE+L M    T  +A  E  +E ++  ++E  ER +  + + +DEEAELK+ E     VE
Sbjct: 27  KEHLRM----TQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEVE 82

Query: 521 SFL 513
             L
Sbjct: 83  KIL 85


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -1

Query: 611 KEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFEIDMGIPAKREREAKDKNKLT 432
           K  EE++ A +K   + +LK  +   ++ ESF  + K+        A  +R  KD   + 
Sbjct: 771 KSFEEKLSALKKEMSDVDLKEIKSCLLSSESFKEYTKKMHFRAITTANGKRIFKDGRVIV 830

Query: 431 GREL 420
            ++L
Sbjct: 831 FQQL 834


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 551 FSVLPLHLPFVWLVSFLHALS 613
           FS + + LPF+ L+SFLH  S
Sbjct: 147 FSPIIITLPFIALISFLHLRS 167


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = -1

Query: 614 KKEREERILA-KQKADEEAELKR 549
           +KERE++ L  KQ+ DE+ ELK+
Sbjct: 33  EKEREKKYLQEKQQKDEQRELKK 55


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 763 TMRRISTILLIKRNFSHILLNRVKKTWEW 677
           T+  ++ ++LI  N SH+     K  W W
Sbjct: 846 TLANLAPMMLITHNASHVPPRPSKSLWNW 874


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,661
Number of Sequences: 5004
Number of extensions: 56744
Number of successful extensions: 183
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)