Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18h20
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   4.2  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   7.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   7.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.4  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 437 LTGRELFLQDTTLNESDLKFLDDGDAVKVDESL 339
           LTGR LF+ D  L+++    +  G+  +  + L
Sbjct: 403 LTGRGLFISDIPLHDATRDVILVGEQARAQDGL 435


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 659 VSAGQEWLNETWDKVKKEREERILAKQKADEEAELKRFE 543
           VSAG    + TW +V +  +   LA +K D+ +    F+
Sbjct: 426 VSAGFSSSSNTWLRVNENYKTVNLAAEKKDKNSFFNMFK 464


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 659 VSAGQEWLNETWDKVKKEREERILAKQKADEEAELKRFE 543
           VSAG    + TW +V +  +   LA +K D+ +    F+
Sbjct: 426 VSAGFSSSSNTWLRVNENYKTVNLAAEKKDKNSFFNMFK 464


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 612 ERA*RKDTSQTKGR*RGRTEK 550
           ER  RK    +KGR R RTE+
Sbjct: 275 EREYRKYRETSKGRSRDRTER 295


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 612 ERA*RKDTSQTKGR*RGRTEK 550
           ER  RK    +KGR R RTE+
Sbjct: 286 EREYRKYRETSKGRSRDRTER 306


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 1   KKRKRIFSALYEYLNYLI 54
           +KRK +F A+  +++YLI
Sbjct: 412 RKRKELFIAIVCFVSYLI 429


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 1   KKRKRIFSALYEYLNYLI 54
           +KRK +F A+  +++YLI
Sbjct: 465 RKRKELFIAIVCFVSYLI 482


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -1

Query: 656 SAGQEWLNETWDKVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFEIDM 483
           SAG    N+TW  V +  +   LA QK +  +    F+      +  +      E+D+
Sbjct: 433 SAGFSQTNKTWLPVNENYKSLNLAAQKREYYSHYVAFKSLSYLKKQPVIANGSLEVDV 490


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,119
Number of Sequences: 438
Number of extensions: 3747
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)