Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18h15
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    25   4.5  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   6.0  
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    24   7.9  

>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 342 KEHCNNCNEIYCYN 301
           + HC  C +++CYN
Sbjct: 46  RHHCRWCGKLFCYN 59


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -3

Query: 342 KEHCNNCNEIYCYNSTAQRM 283
           K HC NC  ++C   +++ +
Sbjct: 189 KHHCRNCGGVFCNQCSSKTL 208


>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 312 IFHCNYYNVPLFVVNCPENTAYSYVSDGCIL 404
           IF   Y ++PL  VN   N  Y Y+++  +L
Sbjct: 35  IFDSIYQDIPLKKVNFECNNEYQYINNWKVL 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,200,676
Number of Sequences: 5004
Number of extensions: 19132
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)