Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18h12
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   130   1e-31
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   0.65 
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   0.86 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    27   1.5  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   2.0  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   3.5  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   3.5  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   6.1  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    24   8.0  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  130 bits (313), Expect = 1e-31
 Identities = 59/80 (73%), Positives = 71/80 (88%)
 Frame = -2

Query: 278 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRK 99
           +K Q   S +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTKIL+ITTRK
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67

Query: 98  TPCGEGSKTWDRFQMRIHKR 39
           TP GEGSKTW+ ++MRIHKR
Sbjct: 68  TPNGEGSKTWETYEMRIHKR 87


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.9 bits (59), Expect = 0.65
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 296  VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVK 147
            +S   IEKP+A  SPIH       +  +R L+ V      GA++ +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 0.86
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 305 AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 207
           A V +  D+EKPQ +V+   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = -2

Query: 206 LEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRGDRP 27
           L KV + + +   ++K +++GP+    K LR+    +P      + D F+ ++  R +RP
Sbjct: 202 LTKVRSPIPSRRGRRKRKMRGPILPVKKNLRVKKAMSPLRAERNSPD-FRRKLRSRDNRP 260

Query: 26  TLSL 15
              L
Sbjct: 261 NYHL 264


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 20  RV*VDHLSCGFSSENDPRSL 79
           R+ +D+LSC    ENDP  L
Sbjct: 694 RISIDNLSCMLEQENDPTQL 713


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 324 IPAEINNFSIKNCSALNRRNL 386
           + +E+N+  IKN S LN RNL
Sbjct: 592 LESELNSSKIKNESLLNERNL 612


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 150  KGPSPHANQDPAYHHP*NSLW*RFKDLGSFSDEN--PQER*STYTLP 16
            K P+ +ANQ P   +  N+ W +    G FS+ N   ++    YT P
Sbjct: 916  KTPAWNANQTPMVANGTNTSWGQTPAYGGFSETNWDTEDNSKPYTAP 962


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 104 RKTPCGEGSKTWDRFQM 54
           R +P   GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
 Frame = +2

Query: 263 LPGVSQCLCLTLQRLPCCLLN---SGR---DKQLFNQKLFSAEPEKPHV 391
           LP   +C+ LT ++LP        SGR   D  + N    S  P+  HV
Sbjct: 489 LPETFECISLTYRKLPDSWKQDKCSGRDDLDNSVLNDDYISVAPKPSHV 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,752,391
Number of Sequences: 5004
Number of extensions: 34985
Number of successful extensions: 93
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)