Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18h12
         (411 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514          126   9e-30
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294          125   2e-29
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923          123   5e-29
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504...    38   0.004
07_01_0344 - 2490700-2493249                                           30   0.63 
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794...    30   0.63 
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348...    29   1.9  
03_03_0162 - 14964106-14964644,14964810-14965020                       27   5.8  
12_01_0936 - 9285923-9286086,9286343-9286546,9287987-9288143           27   7.7  
05_05_0026 + 21645845-21647404                                         27   7.7  
03_06_0677 + 35476009-35476014,35476974-35477474,35477574-354777...    27   7.7  
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124...    27   7.7  

>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
          Length = 130

 Score =  126 bits (303), Expect = 9e-30
 Identities = 55/90 (61%), Positives = 72/90 (80%)
 Frame = -2

Query: 308 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 129
           A   + G  +   +A    ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGPVR+P
Sbjct: 9   AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68

Query: 128 TKILRITTRKTPCGEGSKTWDRFQMRIHKR 39
           TK+L ITTRK+PCGEG+ TWDRF+ RIHKR
Sbjct: 69  TKVLHITTRKSPCGEGTNTWDRFEFRIHKR 98


>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
          Length = 127

 Score =  125 bits (301), Expect = 2e-29
 Identities = 59/95 (62%), Positives = 75/95 (78%), Gaps = 4/95 (4%)
 Frame = -2

Query: 311 MAAAVV----SGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKG 144
           MAAA V     G  +   +A    ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKG
Sbjct: 1   MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60

Query: 143 PVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKR 39
           PVR+PTK+L ITTRK+PCGEG+ TWDRF+ RIHKR
Sbjct: 61  PVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKR 95


>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
          Length = 128

 Score =  123 bits (297), Expect = 5e-29
 Identities = 57/90 (63%), Positives = 72/90 (80%)
 Frame = -2

Query: 308 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 129
           A  + SGK   +   EV   HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMP
Sbjct: 9   APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMP 66

Query: 128 TKILRITTRKTPCGEGSKTWDRFQMRIHKR 39
           TK+L ITTRK+PCGEG+ TWDRF+MR+HKR
Sbjct: 67  TKVLHITTRKSPCGEGTNTWDRFEMRVHKR 96


>03_02_0020 -
           5045900-5046211,5046233-5046290,5046604-5047242,
           5048475-5048515,5048672-5048728,5048952-5049140
          Length = 431

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = -2

Query: 260 VSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEG 81
           ++P  +IRI L S  V  +E  C  +I  AK    +  GPV +PTK        +P    
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388

Query: 80  SKTWDRFQMRIHKR 39
              +  F++R H+R
Sbjct: 389 DSRF-HFEIRTHQR 401


>07_01_0344 - 2490700-2493249
          Length = 849

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 244 RWIGETSAWGFSMSLPDTTAAA 309
           RWIG++S   F++SLP T A A
Sbjct: 46  RWIGDSSPKNFTLSLPGTVATA 67


>03_06_0314 -
           33077621-33077869,33078218-33078280,33079392-33079449,
           33079534-33079688,33079797-33080106,33080634-33080890,
           33081280-33081359,33083888-33083948
          Length = 410

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 216 CALAREGLC*PNQWSQETEAACKGPSP 136
           C LA EGL   ++W++   A  +GPSP
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSP 181


>06_02_0345 +
           14833838-14833997,14834095-14834552,14834633-14834870,
           14834974-14835431,14836554-14836955
          Length = 571

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = -1

Query: 243 HQDHSYFTQCALAREGLC*PNQWSQETEAACKG--PSPH---ANQDPA 115
           H   S   +CAL R+G     +W  ET   C G  P+P     +QDPA
Sbjct: 11  HHLQSTLFECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPA 58


>03_03_0162 - 14964106-14964644,14964810-14965020
          Length = 249

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 287 CLTLQRLPCCLLNSGRDKQLFNQKLFSAEPEKPHVSVTFER 409
           C  L+R+  C      +K  F+Q L     E+PH +++F R
Sbjct: 31  CNRLKRIFACGCAGRTEKLRFSQTLSRFRLEQPHATISFVR 71


>12_01_0936 - 9285923-9286086,9286343-9286546,9287987-9288143
          Length = 174

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 379 LRFSAEQFLIEKLFISAGIQQATWQPL*CQAKTLRNPRQR 260
           +R + E   I   ++SA    A + P  CQ KTL  P++R
Sbjct: 3   IRRAIENANIPHTYVSANCFAAYFSPNLCQMKTLLPPKER 42


>05_05_0026 + 21645845-21647404
          Length = 519

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 163 CFLAPLIRSAQTFSSERTL 219
           C L PL+RSA ++ SER L
Sbjct: 171 CRLIPLLRSASSYGSERLL 189


>03_06_0677 +
           35476009-35476014,35476974-35477474,35477574-35477762,
           35477925-35477945
          Length = 238

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 186 PNQWSQETEAACKGPSPHANQDPAYHHP 103
           PN    +TEA  K    HA  DPA   P
Sbjct: 41  PNNHHGDTEALSKASPLHAGSDPAMRKP 68


>01_06_1409 -
           37111954-37112061,37112295-37112330,37112434-37112498,
           37112610-37112688,37112967-37113041,37113623-37114147
          Length = 295

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -2

Query: 362 TIFD*KVVYLGRNSTSNMAAAVVSGKDIEK-PQAEVSPIHRIRITLTSRNVRSLEKVCAD 186
           +I + K V L    + N+     SG +I+   +  V+ IHR R+TL  +++ S       
Sbjct: 215 SILEAKDVLLHAERSWNITLPGFSGDEIKLYKKPHVNDIHRERLTLIKKSMASESNAKGS 274

Query: 185 LINGAKKQKLRVKGP 141
               A  QK +   P
Sbjct: 275 AAQAAANQKNQTPKP 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,907,461
Number of Sequences: 37544
Number of extensions: 260924
Number of successful extensions: 631
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)