Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18h12
         (411 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20 pro...   141   9e-34
BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20 p...   141   9e-34
BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20 p...   141   9e-34
AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20 p...   141   9e-34
AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20 p...    84   2e-16

>L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  141 bits (341), Expect = 9e-34
 Identities = 68/84 (80%), Positives = 72/84 (85%), Gaps = 1/84 (1%)
 Frame = -2

Query: 287 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 111
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 110 TTRKTPCGEGSKTWDRFQMRIHKR 39
           TTRKTPCGEGSKTWDRFQMRIHKR
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKR 87


>BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  141 bits (341), Expect = 9e-34
 Identities = 68/84 (80%), Positives = 72/84 (85%), Gaps = 1/84 (1%)
 Frame = -2

Query: 287 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 111
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 110 TTRKTPCGEGSKTWDRFQMRIHKR 39
           TTRKTPCGEGSKTWDRFQMRIHKR
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKR 87


>BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  141 bits (341), Expect = 9e-34
 Identities = 68/84 (80%), Positives = 72/84 (85%), Gaps = 1/84 (1%)
 Frame = -2

Query: 287 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 111
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 110 TTRKTPCGEGSKTWDRFQMRIHKR 39
           TTRKTPCGEGSKTWDRFQMRIHKR
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKR 87


>AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  141 bits (341), Expect = 9e-34
 Identities = 68/84 (80%), Positives = 72/84 (85%), Gaps = 1/84 (1%)
 Frame = -2

Query: 287 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 111
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 110 TTRKTPCGEGSKTWDRFQMRIHKR 39
           TTRKTPCGEGSKTWDRFQMRIHKR
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKR 87


>AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20
           protein.
          Length = 60

 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 36/37 (97%), Positives = 36/37 (97%)
 Frame = -2

Query: 149 KGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKR 39
           KGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR
Sbjct: 1   KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKR 37


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,928,811
Number of Sequences: 237096
Number of extensions: 1509903
Number of successful extensions: 3006
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3006
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)