Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18h12
(411 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y11119-1|CAA72004.1| 120|Drosophila melanogaster S20 ribosomal ... 150 6e-37
AY071742-1|AAL49364.1| 120|Drosophila melanogaster RH47995p pro... 150 6e-37
AE014297-2870|AAF55809.1| 120|Drosophila melanogaster CG15693-P... 150 6e-37
AY071353-1|AAL48975.1| 120|Drosophila melanogaster RE38972p pro... 145 2e-35
AY122237-1|AAM52749.1| 351|Drosophila melanogaster RH74174p pro... 29 2.4
AE014134-1995|AAF53038.1| 351|Drosophila melanogaster CG4621-PA... 29 2.4
BT022291-1|AAY54707.1| 336|Drosophila melanogaster IP08195p pro... 27 7.3
AY075183-1|AAL68053.1| 388|Drosophila melanogaster AT13019p pro... 27 7.3
AY052145-1|AAK93569.1| 966|Drosophila melanogaster SD10481p pro... 27 7.3
AE014296-1731|AAF50208.2| 213|Drosophila melanogaster CG32044-P... 27 7.3
AE013599-3908|AAF47233.2| 388|Drosophila melanogaster CG4681-PA... 27 7.3
AE013599-2549|AAF57801.1| 966|Drosophila melanogaster CG4996-PA... 27 7.3
>Y11119-1|CAA72004.1| 120|Drosophila melanogaster S20 ribosomal
protein protein.
Length = 120
Score = 150 bits (364), Expect = 6e-37
Identities = 71/84 (84%), Positives = 74/84 (88%), Gaps = 1/84 (1%)
Frame = -2
Query: 287 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 111
KDIEKP + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6 KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65
Query: 110 TTRKTPCGEGSKTWDRFQMRIHKR 39
TTRKTPCGEGSKTWDRFQMRIHKR
Sbjct: 66 TTRKTPCGEGSKTWDRFQMRIHKR 89
>AY071742-1|AAL49364.1| 120|Drosophila melanogaster RH47995p
protein.
Length = 120
Score = 150 bits (364), Expect = 6e-37
Identities = 71/84 (84%), Positives = 74/84 (88%), Gaps = 1/84 (1%)
Frame = -2
Query: 287 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 111
KDIEKP + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6 KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65
Query: 110 TTRKTPCGEGSKTWDRFQMRIHKR 39
TTRKTPCGEGSKTWDRFQMRIHKR
Sbjct: 66 TTRKTPCGEGSKTWDRFQMRIHKR 89
>AE014297-2870|AAF55809.1| 120|Drosophila melanogaster CG15693-PA
protein.
Length = 120
Score = 150 bits (364), Expect = 6e-37
Identities = 71/84 (84%), Positives = 74/84 (88%), Gaps = 1/84 (1%)
Frame = -2
Query: 287 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 111
KDIEKP + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6 KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65
Query: 110 TTRKTPCGEGSKTWDRFQMRIHKR 39
TTRKTPCGEGSKTWDRFQMRIHKR
Sbjct: 66 TTRKTPCGEGSKTWDRFQMRIHKR 89
>AY071353-1|AAL48975.1| 120|Drosophila melanogaster RE38972p
protein.
Length = 120
Score = 145 bits (352), Expect = 2e-35
Identities = 69/84 (82%), Positives = 73/84 (86%), Gaps = 1/84 (1%)
Frame = -2
Query: 287 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 111
KDIEKP + + +H IRITLTSRNVRSLE VC DLINGAK Q LRV+GPVRMPTK LRI
Sbjct: 6 KDIEKPHVGDSASVHCIRITLTSRNVRSLENVCRDLINGAKNQNLRVEGPVRMPTKTLRI 65
Query: 110 TTRKTPCGEGSKTWDRFQMRIHKR 39
TTRKTPCGEGSKTWDRFQMRIHKR
Sbjct: 66 TTRKTPCGEGSKTWDRFQMRIHKR 89
>AY122237-1|AAM52749.1| 351|Drosophila melanogaster RH74174p
protein.
Length = 351
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -2
Query: 188 DLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQ-MRIHKRGDRPT 24
+L + K++K +V+ MPT+ + K E +K+ ++FQ M + K+ RPT
Sbjct: 150 ELDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELEKKKSRPT 205
>AE014134-1995|AAF53038.1| 351|Drosophila melanogaster CG4621-PA
protein.
Length = 351
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -2
Query: 188 DLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQ-MRIHKRGDRPT 24
+L + K++K +V+ MPT+ + K E +K+ ++FQ M + K+ RPT
Sbjct: 150 ELDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELEKKKSRPT 205
>BT022291-1|AAY54707.1| 336|Drosophila melanogaster IP08195p
protein.
Length = 336
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Frame = -1
Query: 303 RCSVRQRH*ETPGRGLPYPPHQDHSYFTQCALAREGLC*PNQ-WSQET---EAACKGPSP 136
+C RQ P L P Q H AL+ E L + W Q T E GPS
Sbjct: 3 KCVSRQ---SAPLHELASPDAQHHQSVLTIALSHEDLAQALKIWQQLTGSNEYIAAGPSS 59
Query: 135 HANQDPAYH 109
H ++P Y+
Sbjct: 60 HQEEEPFYY 68
>AY075183-1|AAL68053.1| 388|Drosophila melanogaster AT13019p
protein.
Length = 388
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 287 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQ 162
K + + Q + HR + L +R+L++ DL+N KKQ
Sbjct: 310 KLLREEQRDQLEAHRKELKLRDSRIRALKRQRGDLLNAYKKQ 351
>AY052145-1|AAK93569.1| 966|Drosophila melanogaster SD10481p
protein.
Length = 966
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 29 VDHLSCGFSSENDPRSLNLHHKEF 100
VD SC FS E+D +L KEF
Sbjct: 570 VDEASCYFSEESDDEQKSLQSKEF 593
>AE014296-1731|AAF50208.2| 213|Drosophila melanogaster CG32044-PA
protein.
Length = 213
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Frame = -1
Query: 303 RCSVRQRH*ETPGRGLPYPPHQDHSYFTQCALAREGLC*PNQ-WSQET---EAACKGPSP 136
+C RQ P L P Q H AL+ E L + W Q T E GPS
Sbjct: 38 KCVSRQ---SAPLHELASPDAQHHQSVLTIALSHEDLAQALKIWQQLTGSNEYIAAGPSS 94
Query: 135 HANQDPAYH 109
H ++P Y+
Sbjct: 95 HQEEEPFYY 103
>AE013599-3908|AAF47233.2| 388|Drosophila melanogaster CG4681-PA
protein.
Length = 388
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 287 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQ 162
K + + Q + HR + L +R+L++ DL+N KKQ
Sbjct: 310 KLLREEQRDQLEAHRKELKLRDSRIRALKRQRGDLLNAYKKQ 351
>AE013599-2549|AAF57801.1| 966|Drosophila melanogaster CG4996-PA
protein.
Length = 966
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 29 VDHLSCGFSSENDPRSLNLHHKEF 100
VD SC FS E+D +L KEF
Sbjct: 570 VDEASCYFSEESDDEQKSLQSKEF 593
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,746,688
Number of Sequences: 53049
Number of extensions: 440684
Number of successful extensions: 1014
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1209331668
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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