Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18h10
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.58 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   4.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   4.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   4.1  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   7.2  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   7.2  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 604 NTQNGISKLLAKTTIW 557
           NT+NG+  LL++T IW
Sbjct: 229 NTKNGMKTLLSETDIW 244


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -1

Query: 476 KSGVSGIMATSKTIVLYLCQAPATASLYVSAD----TDADEPIIYFENITECL 330
           + G+SG+  +  T  LY     +T+  YV+ +    +D  +  I++E +   L
Sbjct: 250 QDGISGMALSPMTNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQNIL 302


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -1

Query: 476 KSGVSGIMATSKTIVLYLCQAPATASLYVSAD----TDADEPIIYFENITECL 330
           + G+SG+  +  T  LY     +T+  YV+ +    +D  +  I++E +   L
Sbjct: 250 QDGISGMALSPMTNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQNIL 302


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -1

Query: 476 KSGVSGIMATSKTIVLYLCQAPATASLYVSAD----TDADEPIIYFENITECL 330
           + G+SG+  +  T  LY     +T+  YV+ +    +D  +  I++E +   L
Sbjct: 250 QDGISGMALSPMTNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQNIL 302


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 571 SQATYLYHFACLMKYKDIQKYEVQQLIEWAINASPD 678
           S  T  +   C  K  +IQK  + +L EW     P+
Sbjct: 65  SHITEAFQTQC-KKCTEIQKQNLDKLAEWFTTNEPE 99


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 571 SQATYLYHFACLMKYKDIQKYEVQQLIEWAINASPD 678
           S  T  +   C  K  +IQK  + +L EW     P+
Sbjct: 65  SHITEAFQTQC-KKCTEIQKQNLDKLAEWFTTNEPE 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,379
Number of Sequences: 438
Number of extensions: 4414
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)