Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18h07
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   254   6e-68
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  254 bits (621), Expect = 6e-68
 Identities = 128/216 (59%), Positives = 151/216 (69%)
 Frame = -1

Query: 727 PATGCQKLXEVVDEHKLXIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGV 548
           PATG QK  EV +E KL +F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQGFPMKQG+
Sbjct: 8   PATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQGFPMKQGI 67

Query: 547 LTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDG 368
           LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  EI GLTD 
Sbjct: 68  LTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDS 127

Query: 367 NVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPV 188
            +PR+LGPKRASKIRKLFNL+K DDV +YV+       +G      +  APKIQRL+TP 
Sbjct: 128 VLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDG----VTKTIAPKIQRLITPA 183

Query: 187 VLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKE 80
            +                 +   A Y KLLA+  KE
Sbjct: 184 RIARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKE 219


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 44  PAFDLFLATHLGFLLSLCKQFSIFSLRGLALSETLLLQSE 163
           P F ++    +G L+++C Q SIFS+  L + +  +L ++
Sbjct: 70  PFFGIWFELIIGKLITMCYQLSIFSIGNLEIRKFYVLWTD 109


>Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical
           protein F25H5.5 protein.
          Length = 725

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 333 PKSVSCSTLAKKMMYVVMSSNACSQPRKEKKMLNPDIRHLRS 208
           PKS+  S   KK +   MS+    +  + +KM   D  HL++
Sbjct: 105 PKSLLTSETLKKKLQASMSAKRRKEQEQRRKMYEEDNEHLKA 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,336,128
Number of Sequences: 27780
Number of extensions: 341584
Number of successful extensions: 840
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)