Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18h05
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 60 1e-09
04_01_0042 + 473912-474058,474208-474349,474442-476264 55 7e-08
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 52 3e-07
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 52 6e-07
09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821 51 8e-07
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 51 8e-07
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 51 8e-07
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 51 1e-06
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 45 5e-05
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51... 28 8.6
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/100 (34%), Positives = 56/100 (56%)
Frame = -3
Query: 509 FGWTGNMERLALSNAHQKXDDPQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXX 330
+GW+ NME++ S Q D ++ ++ K++LEINPRHPI+ EL +V
Sbjct: 705 YGWSANMEKIMQS---QTLSDASKQAYMRGKRVLEINPRHPIIKELRDKVAQDSESESLK 761
Query: 329 XXAHTLYRTAALRSGYVLQEGQAVLFADSVETMLQRTLGL 210
A +Y+TA + SG+ L + + FA S+ +Q++L L
Sbjct: 762 QTAKLVYQTALMESGFNLPDPKD--FASSIYRSVQKSLDL 799
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 54.8 bits (126), Expect = 7e-08
Identities = 37/134 (27%), Positives = 58/134 (43%)
Frame = -3
Query: 611 PLTRWLXDKLGSWITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKXDDPQRRH 432
PL + + D LG + + V +GWT NMER+ + A + D
Sbjct: 544 PLCKVIKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALR---DSSMGA 600
Query: 431 HLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAALRSGYVLQEGQAVLF 252
+++ KK +EINP + I+ EL +R L+ TA L SG+ L + F
Sbjct: 601 YMSSKKTMEINPENGIMEELRKRADADANDKSVRDLVLLLFETALLTSGFSLDDPNT--F 658
Query: 251 ADSVETMLQRTLGL 210
A + ML+ L +
Sbjct: 659 AARIHRMLKLGLNI 672
>09_04_0497 -
18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/109 (27%), Positives = 44/109 (40%)
Frame = -3
Query: 608 LTRWLXDKLGSWITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKXDDPQRRHH 429
L W+ +LG + + + FGW+ NMERL + Q D
Sbjct: 629 LCDWIKQQLGDKVAKVQISNRLSSSPCVLVSGKFGWSANMERLMKA---QTLGDTSSLEF 685
Query: 428 LTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAALRSGY 282
+ +++ EINP HPIV +L + LY TA + SGY
Sbjct: 686 MRGRRIFEINPDHPIVKDLSAACKNEPESTEAKRAVELLYETALISSGY 734
>08_02_1073 - 24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 51.6 bits (118), Expect = 6e-07
Identities = 30/109 (27%), Positives = 44/109 (40%)
Frame = -3
Query: 608 LTRWLXDKLGSWITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKXDDPQRRHH 429
L W+ +LG + + + FGW+ NMERL + Q D
Sbjct: 878 LCDWVKQQLGDKVAKVQISKRLSLSPCVLVSGKFGWSANMERLMKA---QTLGDTSSLEF 934
Query: 428 LTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAALRSGY 282
+ +++ EINP HPIV +L + LY TA + SGY
Sbjct: 935 MRGRRIFEINPDHPIVKDLNAACKNEPESTEAKRAVELLYETALISSGY 983
>09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821
Length = 576
Score = 51.2 bits (117), Expect = 8e-07
Identities = 34/133 (25%), Positives = 57/133 (42%)
Frame = -3
Query: 608 LTRWLXDKLGSWITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKXDDPQRRHH 429
L + + + LG + + V +GWT NMER+ + A + D +
Sbjct: 290 LCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALR---DSSMAGY 346
Query: 428 LTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAALRSGYVLQEGQAVLFA 249
++ KK +EINP + I+ EL +R L+ TA L SG+ L++ F
Sbjct: 347 MSSKKTMEINPENAIMDELRKRADADKNDKSVKDLVMLLFETALLTSGFSLEDPNT--FG 404
Query: 248 DSVETMLQRTLGL 210
+ ML+ L +
Sbjct: 405 TRIHRMLKLGLSI 417
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 51.2 bits (117), Expect = 8e-07
Identities = 34/133 (25%), Positives = 57/133 (42%)
Frame = -3
Query: 608 LTRWLXDKLGSWITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKXDDPQRRHH 429
L + + + LG + + V +GWT NMER+ + A + D +
Sbjct: 544 LCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALR---DSSMAGY 600
Query: 428 LTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAALRSGYVLQEGQAVLFA 249
++ KK +EINP + I+ EL +R L+ TA L SG+ L++ F
Sbjct: 601 MSSKKTMEINPENAIMDELRKRADADKNDKSVKDLVMLLFETALLTSGFSLEDPNT--FG 658
Query: 248 DSVETMLQRTLGL 210
+ ML+ L +
Sbjct: 659 TRIHRMLKLGLSI 671
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 51.2 bits (117), Expect = 8e-07
Identities = 34/133 (25%), Positives = 57/133 (42%)
Frame = -3
Query: 608 LTRWLXDKLGSWITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKXDDPQRRHH 429
L + + + LG + + V +GWT NMER+ + A + D +
Sbjct: 544 LCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALR---DSSMAGY 600
Query: 428 LTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAALRSGYVLQEGQAVLFA 249
++ KK +EINP + I+ EL +R L+ TA L SG+ L++ F
Sbjct: 601 MSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVMLLFETALLTSGFSLEDPNT--FG 658
Query: 248 DSVETMLQRTLGL 210
+ ML+ L +
Sbjct: 659 TRIHRMLKLGLSI 671
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 50.8 bits (116), Expect = 1e-06
Identities = 34/133 (25%), Positives = 56/133 (42%)
Frame = -3
Query: 608 LTRWLXDKLGSWITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKXDDPQRRHH 429
L + + + LG + + V +GWT NMER+ + A + D +
Sbjct: 544 LCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALR---DSSMAGY 600
Query: 428 LTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAALRSGYVLQEGQAVLFA 249
++ KK +EINP + I+ EL +R L+ TA L SG+ L + F
Sbjct: 601 MSSKKTMEINPENAIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDDPNT--FG 658
Query: 248 DSVETMLQRTLGL 210
+ ML+ L +
Sbjct: 659 SRIHRMLKLGLSI 671
>12_02_0522 - 19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/106 (24%), Positives = 41/106 (38%)
Frame = -3
Query: 599 WLXDKLGSWITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKXDDPQRRHHLTQ 420
W+ +LG + R + FGW+ NMERL + Q D +
Sbjct: 892 WIKKRLGEKVARVDISNRLSSSPCVLVAAKFGWSANMERLMRA---QSMGDMSSLDFMRS 948
Query: 419 KKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAALRSGY 282
+K+ EINP H I+ L + L+ T+ + SG+
Sbjct: 949 RKVFEINPEHEIIKGLNAACRANPDDPEALKAVDILFETSMISSGF 994
>07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-518900,
519883-520638,520990-521164,521303-521387
Length = 1160
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 506 GWTGNMERLALSNAHQKXDDPQRRH 432
GWT E + S + K DDP+R H
Sbjct: 938 GWTSKPEGIHQSRSTTKPDDPKRAH 962
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,411,762
Number of Sequences: 37544
Number of extensions: 68384
Number of successful extensions: 240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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