Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18h05
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical pr...    97   1e-20
Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical pr...    50   2e-06

>Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical protein
            T05E11.3 protein.
          Length = 760

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 58/169 (34%), Positives = 82/169 (48%), Gaps = 1/169 (0%)
 Frame = -3

Query: 719  PXYDGHKFPEHRQGNXDLXXXXXXXXXXXXXXXXXEPLTRWLXDK-LGSWITRATVXXXX 543
            P Y+  KF    +    +                 +PLT WL +  L   I +A V    
Sbjct: 558  PEYESKKFQNVAKEGVTIDDGEKAKEAHKGLEEEFKPLTDWLKETALKDLIEKAVVSQRL 617

Query: 542  XXXXXXXXXXAFGWTGNMERLALSNAHQKXDDPQRRHHLTQKKMLEINPRHPIVAELLRR 363
                      ++GW+GNMER+  S A+ K  DP +  + TQKK  EINPRHP++ ELL+R
Sbjct: 618  VKSPSALVASSYGWSGNMERIMKSQAYAKAKDPTQDFYATQKKTFEINPRHPVIKELLKR 677

Query: 362  VQXXXXXXXXXXXAHTLYRTAALRSGYVLQEGQAVLFADSVETMLQRTL 216
            V            A  L+ TA LRSG+ LQ+   V FAD +E +L+++L
Sbjct: 678  VTASEEDTTAASTAKLLFETATLRSGFSLQD--QVGFADRIEAVLRQSL 724


>Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical
           protein C47E8.5 protein.
          Length = 702

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 29/83 (34%), Positives = 42/83 (50%)
 Frame = -3

Query: 509 FGWTGNMERLALSNAHQKXDDPQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXX 330
           +GW+ NMER+  + A +   D     ++  KK LEINP H I+  L  RV+         
Sbjct: 574 YGWSANMERIMKAQALR---DSSTMGYMAAKKHLEINPDHAIMKTLRDRVEVDKNDKTVK 630

Query: 329 XXAHTLYRTAALRSGYVLQEGQA 261
                L+ TA L SG+ L+E Q+
Sbjct: 631 DLVVLLFETALLASGFSLEEPQS 653


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,860,144
Number of Sequences: 27780
Number of extensions: 52080
Number of successful extensions: 156
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)