Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18h04
         (684 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...   332   3e-91
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...   332   3e-91
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...   316   2e-86
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...   271   5e-73
AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...   256   2e-68
AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD, i...   198   8e-51
AE013599-2921|AAF57537.1|  632|Drosophila melanogaster CG15904-P...    29   7.8  

>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score =  332 bits (815), Expect = 3e-91
 Identities = 157/209 (75%), Positives = 179/209 (85%)
 Frame = -1

Query: 684 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 505
           RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D ERSFRK
Sbjct: 27  RKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRK 86

Query: 504 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 325
           FRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT
Sbjct: 87  FRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFT 146

Query: 324 NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHG 145
            KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  
Sbjct: 147 AKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQR 206

Query: 144 IYPLRDVCIRKVKVLKRPRFEISKLMELH 58
           IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 207 IYPLHDVYIRKVKVLKKPRFDVSKLLELH 235


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score =  332 bits (815), Expect = 3e-91
 Identities = 157/209 (75%), Positives = 179/209 (85%)
 Frame = -1

Query: 684 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 505
           RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D ERSFRK
Sbjct: 27  RKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRK 86

Query: 504 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 325
           FRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT
Sbjct: 87  FRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFT 146

Query: 324 NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHG 145
            KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  
Sbjct: 147 AKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQR 206

Query: 144 IYPLRDVCIRKVKVLKRPRFEISKLMELH 58
           IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 207 IYPLHDVYIRKVKVLKKPRFDVSKLLELH 235


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score =  316 bits (776), Expect = 2e-86
 Identities = 153/211 (72%), Positives = 175/211 (82%), Gaps = 2/211 (0%)
 Frame = -1

Query: 684 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLA-DLQADTDAERSFR 508
           RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+  KGRVFEVSL  DLQ D D E SFR
Sbjct: 27  RKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVPDLQKDIDPEHSFR 86

Query: 507 KFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGF 328
           KFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGF
Sbjct: 87  KFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGF 146

Query: 327 TNKDSLSQRKTCYAQHTQVRAIRK-KMCEIITRDVTNSELREVVNKLIPDSIAKDIEKAC 151
           T KD  SQRKTCYA  +QVR IR  +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C
Sbjct: 147 TAKDQQSQRKTCYAHESQVRKIRSGRMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSC 206

Query: 150 HGIYPLRDVCIRKVKVLKRPRFEISKLMELH 58
             IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 207 QRIYPLHDVYIRKVKVLKKPRFDVSKLLELH 237


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score =  271 bits (665), Expect = 5e-73
 Identities = 129/172 (75%), Positives = 147/172 (85%)
 Frame = -1

Query: 573 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 394
           GRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14  GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73

Query: 393 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 214
           IEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++
Sbjct: 74  IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGAD 133

Query: 213 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 58
           L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 134 LKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELH 185


>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score =  256 bits (627), Expect = 2e-68
 Identities = 120/162 (74%), Positives = 138/162 (85%)
 Frame = -1

Query: 684 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 505
           RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D ERSFRK
Sbjct: 27  RKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRK 86

Query: 504 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 325
           FRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT
Sbjct: 87  FRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFT 146

Query: 324 NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVV 199
            KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++L++++
Sbjct: 147 AKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLL 188


>AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD,
           isoform D protein.
          Length = 163

 Score =  198 bits (482), Expect = 8e-51
 Identities = 92/130 (70%), Positives = 110/130 (84%)
 Frame = -1

Query: 447 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 268
           MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR
Sbjct: 1   MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60

Query: 267 AIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPR 88
            IR +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLK+PR
Sbjct: 61  KIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPR 120

Query: 87  FEISKLMELH 58
           F++SKL+ELH
Sbjct: 121 FDVSKLLELH 130


>AE013599-2921|AAF57537.1|  632|Drosophila melanogaster CG15904-PA
           protein.
          Length = 632

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 115 SDANIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDC 267
           + AN+      M  LLD++  GV   L+H   E     V    +   ++DC
Sbjct: 264 TSANVTADYLNMTNLLDLVSQGVYETLIHSFTEITTKFVVSYSYPIGINDC 314


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,435,699
Number of Sequences: 53049
Number of extensions: 690143
Number of successful extensions: 2084
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2082
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)