Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18h01
         (789 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113263-1|AAM29268.1|  338|Drosophila melanogaster AT15655p pro...    38   0.012
AE014296-732|AAF47822.1|  338|Drosophila melanogaster CG1134-PA ...    38   0.012
BT004481-1|AAO42645.1|  771|Drosophila melanogaster LD34250p pro...    33   0.59 
AE014298-1948|AAF48305.1|  789|Drosophila melanogaster CG9941-PA...    33   0.59 
S62597-1|AAB27151.1|  753|Drosophila melanogaster neu protein.         30   4.1  
L12218-1|AAA28403.1|  754|Drosophila melanogaster zinc finger pr...    30   4.1  
BT003772-1|AAO41451.1|  672|Drosophila melanogaster RE20876p pro...    30   4.1  
AY051987-1|AAK93411.1|  753|Drosophila melanogaster LD45505p pro...    30   4.1  
AE014297-865|AAF54330.1|  754|Drosophila melanogaster CG11988-PA...    30   4.1  
AE014297-864|AAF54326.2|  753|Drosophila melanogaster CG11988-PB...    30   4.1  
AE014297-863|AAN13407.1|  672|Drosophila melanogaster CG11988-PC...    30   4.1  
AE014297-862|AAN13406.1|  671|Drosophila melanogaster CG11988-PD...    30   4.1  
BT029068-1|ABJ17001.1|  219|Drosophila melanogaster IP08077p pro...    29   7.2  
AY069072-1|AAL39217.1|  319|Drosophila melanogaster GH09066p pro...    29   7.2  
AY058770-1|AAL13999.1|  699|Drosophila melanogaster SD05126p pro...    29   7.2  
AE014297-4198|AAN14131.1|  219|Drosophila melanogaster CG31053-P...    29   7.2  
AE013599-1613|AAF58440.1|  700|Drosophila melanogaster CG17019-P...    29   7.2  
AY119243-1|AAM51103.1|  382|Drosophila melanogaster SD20045p pro...    29   9.6  
AY113533-1|AAM29538.1|  274|Drosophila melanogaster RE60872p pro...    29   9.6  
AL121804-2|CAB58065.1|  468|Drosophila melanogaster EG:BACR7C10....    29   9.6  
AE014298-420|AAF45795.2|  468|Drosophila melanogaster CG13761-PB...    29   9.6  
AE014134-3269|AAF53913.1|  274|Drosophila melanogaster CG2617-PA...    29   9.6  

>AY113263-1|AAM29268.1|  338|Drosophila melanogaster AT15655p
           protein.
          Length = 338

 Score = 38.3 bits (85), Expect = 0.012
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 739 CGHSCLCTDCDETVNVDNTCPKCKSGI 659
           CGH CLC DC + ++V  TCP C+  I
Sbjct: 305 CGHVCLCEDCAQKISV--TCPVCRGSI 329


>AE014296-732|AAF47822.1|  338|Drosophila melanogaster CG1134-PA
           protein.
          Length = 338

 Score = 38.3 bits (85), Expect = 0.012
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 739 CGHSCLCTDCDETVNVDNTCPKCKSGI 659
           CGH CLC DC + ++V  TCP C+  I
Sbjct: 305 CGHVCLCEDCAQKISV--TCPVCRGSI 329


>BT004481-1|AAO42645.1|  771|Drosophila melanogaster LD34250p
           protein.
          Length = 771

 Score = 32.7 bits (71), Expect = 0.59
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 739 CGHSCLCTDCDETVNVD-NTCPKCKSGIRYKLKYKTL 632
           C H CLC  C +++    N CP C++  R  L+ + +
Sbjct: 316 CRHLCLCNSCADSLRYQANNCPICRAPFRALLQIRAV 352


>AE014298-1948|AAF48305.1|  789|Drosophila melanogaster CG9941-PA
           protein.
          Length = 789

 Score = 32.7 bits (71), Expect = 0.59
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 739 CGHSCLCTDCDETVNVD-NTCPKCKSGIRYKLKYKTL 632
           C H CLC  C +++    N CP C++  R  L+ + +
Sbjct: 334 CRHLCLCNSCADSLRYQANNCPICRAPFRALLQIRAV 370


>S62597-1|AAB27151.1|  753|Drosophila melanogaster neu protein.
          Length = 753

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 739 CGHSCLCTDC--DETVNV-DNTCPKCKSGIR 656
           CGH C+C DC  ++   V    CP C++ IR
Sbjct: 715 CGHMCMCYDCAIEQWRGVGGGQCPLCRAVIR 745


>L12218-1|AAA28403.1|  754|Drosophila melanogaster zinc finger
           protein protein.
          Length = 754

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 739 CGHSCLCTDC--DETVNV-DNTCPKCKSGIR 656
           CGH C+C DC  ++   V    CP C++ IR
Sbjct: 716 CGHMCMCYDCAIEQWRGVGGGQCPLCRAVIR 746


>BT003772-1|AAO41451.1|  672|Drosophila melanogaster RE20876p
           protein.
          Length = 672

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 739 CGHSCLCTDC--DETVNV-DNTCPKCKSGIR 656
           CGH C+C DC  ++   V    CP C++ IR
Sbjct: 634 CGHMCMCYDCAIEQWRGVGGGQCPLCRAVIR 664


>AY051987-1|AAK93411.1|  753|Drosophila melanogaster LD45505p
           protein.
          Length = 753

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 739 CGHSCLCTDC--DETVNV-DNTCPKCKSGIR 656
           CGH C+C DC  ++   V    CP C++ IR
Sbjct: 715 CGHMCMCYDCAIEQWRGVGGGQCPLCRAVIR 745


>AE014297-865|AAF54330.1|  754|Drosophila melanogaster CG11988-PA,
           isoform A protein.
          Length = 754

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 739 CGHSCLCTDC--DETVNV-DNTCPKCKSGIR 656
           CGH C+C DC  ++   V    CP C++ IR
Sbjct: 716 CGHMCMCYDCAIEQWRGVGGGQCPLCRAVIR 746


>AE014297-864|AAF54326.2|  753|Drosophila melanogaster CG11988-PB,
           isoform B protein.
          Length = 753

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 739 CGHSCLCTDC--DETVNV-DNTCPKCKSGIR 656
           CGH C+C DC  ++   V    CP C++ IR
Sbjct: 715 CGHMCMCYDCAIEQWRGVGGGQCPLCRAVIR 745


>AE014297-863|AAN13407.1|  672|Drosophila melanogaster CG11988-PC,
           isoform C protein.
          Length = 672

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 739 CGHSCLCTDC--DETVNV-DNTCPKCKSGIR 656
           CGH C+C DC  ++   V    CP C++ IR
Sbjct: 634 CGHMCMCYDCAIEQWRGVGGGQCPLCRAVIR 664


>AE014297-862|AAN13406.1|  671|Drosophila melanogaster CG11988-PD,
           isoform D protein.
          Length = 671

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 739 CGHSCLCTDC--DETVNV-DNTCPKCKSGIR 656
           CGH C+C DC  ++   V    CP C++ IR
Sbjct: 633 CGHMCMCYDCAIEQWRGVGGGQCPLCRAVIR 663


>BT029068-1|ABJ17001.1|  219|Drosophila melanogaster IP08077p
           protein.
          Length = 219

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -3

Query: 787 RCRRSFAVYPAVTYX--HCGHSCLCTDCDETVNVDNTCPKCKSGIR 656
           +C R   V P + +    C H  LC  C    + D  CP CK  +R
Sbjct: 8   KCFRRRNVEPTLIFHMTQCQH-VLCASCLSESSTDKKCPLCKRDLR 52


>AY069072-1|AAL39217.1|  319|Drosophila melanogaster GH09066p
           protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 748 YXHCGHSCLCTDCDETVNVDNTCPKCKSGI 659
           +  CGH   CT C + +   N CP C+  I
Sbjct: 284 FLECGHMATCTSCGKVL---NECPICRQYI 310


>AY058770-1|AAL13999.1|  699|Drosophila melanogaster SD05126p
           protein.
          Length = 699

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 748 YXHCGHSCLCTDCDETVNVDNTCPKCKSGI 659
           +  CGH   CT C + +   N CP C+  I
Sbjct: 664 FLECGHMATCTSCGKVL---NECPICRQYI 690


>AE014297-4198|AAN14131.1|  219|Drosophila melanogaster CG31053-PA
           protein.
          Length = 219

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -3

Query: 787 RCRRSFAVYPAVTYX--HCGHSCLCTDCDETVNVDNTCPKCKSGIR 656
           +C R   V P + +    C H  LC  C    + D  CP CK  +R
Sbjct: 8   KCFRRRNVEPTLIFHMTQCQH-VLCASCLSESSTDKKCPLCKRDLR 52


>AE013599-1613|AAF58440.1|  700|Drosophila melanogaster CG17019-PA
           protein.
          Length = 700

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 748 YXHCGHSCLCTDCDETVNVDNTCPKCKSGI 659
           +  CGH   CT C + +   N CP C+  I
Sbjct: 665 FLECGHMATCTSCGKVL---NECPICRQYI 691


>AY119243-1|AAM51103.1|  382|Drosophila melanogaster SD20045p
           protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 727 CLCTDCDETVNVD-NTCPKCKSGIRYKLK 644
           C   +C   ++VD N CP+C +GI  KL+
Sbjct: 210 CPNRNCGAGISVDRNNCPRCDAGISPKLR 238


>AY113533-1|AAM29538.1|  274|Drosophila melanogaster RE60872p
           protein.
          Length = 274

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -3

Query: 787 RCRRSFAVYPAVTYXHCGHSCLCTDC--DETVNVDNTCPKCKSGI 659
           RC    A    V    C H CLC +C     + +++ CP C+  I
Sbjct: 222 RCVVCMAQSRNVVVMPCRHLCLCKECSLQLVLLLEDRCPVCRHNI 266


>AL121804-2|CAB58065.1|  468|Drosophila melanogaster EG:BACR7C10.4
           protein.
          Length = 468

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 727 CLCTDCDETVNVD-NTCPKCKSGIRYKLK 644
           C   +C   ++VD N CP+C +GI  KL+
Sbjct: 296 CPNRNCGAGISVDRNNCPRCDAGISPKLR 324


>AE014298-420|AAF45795.2|  468|Drosophila melanogaster CG13761-PB
           protein.
          Length = 468

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 727 CLCTDCDETVNVD-NTCPKCKSGIRYKLK 644
           C   +C   ++VD N CP+C +GI  KL+
Sbjct: 296 CPNRNCGAGISVDRNNCPRCDAGISPKLR 324


>AE014134-3269|AAF53913.1|  274|Drosophila melanogaster CG2617-PA
           protein.
          Length = 274

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -3

Query: 787 RCRRSFAVYPAVTYXHCGHSCLCTDC--DETVNVDNTCPKCKSGI 659
           RC    A    V    C H CLC +C     + +++ CP C+  I
Sbjct: 222 RCVVCMAQSRNVVVMPCRHLCLCKECSLQLVLLLEDRCPVCRHNI 266


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,768,520
Number of Sequences: 53049
Number of extensions: 629771
Number of successful extensions: 1793
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1793
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3654740856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)