Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18g24
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    28   0.93 
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    26   3.7  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   3.7  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    26   3.7  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   4.9  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    26   4.9  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    25   6.5  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   6.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.6  

>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 494 EAVSSIYGPPLAYQVMFTSIAICLIAIQITQKLENGILDIRF 369
           + VS I GP LA QV  TS+ +  IA  +  K    I D +F
Sbjct: 170 DEVSKIVGPELAKQVAETSVKLYKIARDVALKKGIIIADTKF 211


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 236 HNLVESGASHCSNMLRRLQTPYSLTES--QDNKVSTFAGTQQLL 361
           +NLV +G   C   L +    YSLT S  Q N ++ FA + +++
Sbjct: 407 NNLVVAGGGACEMELSKYLRDYSLTISGKQQNFIAAFARSLEVI 450


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 256 CQPLFQHASPTPNALFLNRV-PR*QGIHICRHA--ATPNIVNLISKMPFSNFCVI 411
           CQ LF+HAS    + F+  + P+   I    H   A   I++L+S  P    C++
Sbjct: 397 CQKLFEHASEAQRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSS-PDQISCIV 450


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 369 YNVRSCCVPANVDTLLSWDSVKE 301
           +++   C+ A VD    WDSV+E
Sbjct: 569 FDIHYACIEAGVDLRKVWDSVRE 591


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 356 VAACLQMWIPCYLGTLLRNKAFGVGEACWN--SGW 258
           +A+CL+ + P  LG  + +K+  +  + WN   GW
Sbjct: 224 LASCLEYYYPQSLGVCILHKSPWIFRSVWNIIKGW 258


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 78  RGRFSTAFGNEDVRRFFPAEGLP 10
           RGRF   + N  ++ +F A G+P
Sbjct: 293 RGRFGNWWANSGLKAYFDAHGIP 315


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 521 IPSNVL*AVEAVSSIYGPPLAYQVMFTSIAICLIAIQIT 405
           IPS+       +     PP+ YQ  FT + I +  + +T
Sbjct: 261 IPSHYTGGFMGIKKSEAPPVPYQQEFTHVVIAMEGLPVT 299


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 477 LWSTFGLPSNVHFHCDLSNCHPNYT 403
           L  TF L   +  +    NCHPN+T
Sbjct: 839 LTKTFKLDETIDLNEIAKNCHPNFT 863


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 19   LCRKESSNIFITKSSAESTSRLISQPTEKIQREIQWVMCL 138
            L R   SNIF +   + S    +++  E I R ++W++ L
Sbjct: 1034 LQRSIVSNIFKSLVGSMSCVEFVAEARETINRSLEWLIVL 1073


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,534
Number of Sequences: 5004
Number of extensions: 53839
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)