Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18g23
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    32   0.10 
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   2.2  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.9  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    26   5.0  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   5.0  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    26   6.6  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    26   6.6  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   8.7  

>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 584 YFQSLILIILAIKVINAHNYHAVSEISFY 498
           Y    I IILAI V+ AH++H  +E+S Y
Sbjct: 287 YILFCIAIILAIIVMAAHSFHVTNEVSIY 315


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 249 LPIQLLMLHPSSCNYLCLPSFDHHNTHLIY 338
           LP+ L    PS  N L LP F HHN + ++
Sbjct: 236 LPV-LSTAGPSYTNSLALPPFHHHNNYKMF 264


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 213 QILLVFSHYIFFLPIQLLM-LHPSSCNYLCLPSFDHHNTHLIYLQNFF 353
           ++L ++S+ I    ++LLM L   S NY+     +HHN  +  LQN F
Sbjct: 383 KLLEIYSYRISAHHVELLMALVVCSRNYMRCNLQEHHNAIVQALQNLF 430


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 502 FITNEFMYRQFMFVRL*SMDSIMYVLSNTRNT 407
           FI N++ YR F   ++ ++  + Y+L    NT
Sbjct: 268 FIRNKYQYRNFFMAQVKTLSFLAYILRTHPNT 299


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 331 SFTYKTSFTLASNSYLEH*WQKVWYMY 411
           SFT  ++FT A+NS+ +  W+KV  MY
Sbjct: 587 SFTKSSTFTSATNSF-DLIWKKVTSMY 612


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 234 HYIFFLPIQLLMLHPSSCNYLCLPSFDHHN 323
           H  F   +++ +L+ + C + CLPSFD  N
Sbjct: 754 HTTFSKRVRIFLLNLAIC-HTCLPSFDEEN 782


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 2   LDPLFCKCLQQFSLKTMVQWANHQYLTI*FV 94
           L+ LFC C ++F+LKT++  A+     I +V
Sbjct: 92  LEDLFCYCGRKFTLKTVLLLADQLISRIEYV 122


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 201 YACIMLYCFFLHFLETGKD 145
           Y CI+L+C    +L++ KD
Sbjct: 9   YFCILLFCIISFYLQSSKD 27


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 104  LAIKQIKLLNIGDWPIEPLFLN 39
            + IK    + IGDWP+  +FL+
Sbjct: 1917 MRIKCFMQMRIGDWPVYSIFLS 1938


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,363
Number of Sequences: 5004
Number of extensions: 54201
Number of successful extensions: 117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)