Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18g23
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z99273-1|CAB16477.1|  645|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z81541-6|CAB04413.2|  326|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical
           protein F53B1.2 protein.
          Length = 483

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = -1

Query: 315 GRMMEGISSC---MS*GVTLVIELVRKKCNG*RPAIFAGLHYACIMLYCFFLHFLETGKD 145
           G  + G+ SC   M  G T VI ++        PA + GLH    +L CF +  +    +
Sbjct: 313 GMSLHGVRSCGDYMFSGHTTVITMISHFITEYTPADWTGLHTFTWVLNCFAIFLILAAHE 372

Query: 144 NYLLMDLEMKSFCSS 100
           +Y + D+ +  + SS
Sbjct: 373 HYSI-DVFIAFYISS 386


>AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical
           protein Y73B3A.3 protein.
          Length = 655

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 340 YKTSFTLASNSYLEH*WQKVWYMY 411
           Y+    LAS  ++ H W+KVW  Y
Sbjct: 492 YENQVLLASKQHMCHVWEKVWVFY 515


>Z99273-1|CAB16477.1|  645|Caenorhabditis elegans Hypothetical
           protein Y45F10C.1 protein.
          Length = 645

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 135 VSSYLFRFRGNVKKNNITLCRHNVDLQILLVFS 233
           V++Y  RF G V +N I L   ++DL+I ++F+
Sbjct: 289 VTTYRGRFHGVVARNMILLDNLSIDLRIRMMFA 321


>Z81541-6|CAB04413.2|  326|Caenorhabditis elegans Hypothetical
           protein F48F5.4 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +3

Query: 222 LVFS-HYIFFLPIQLLMLHPSSCN 290
           L++S HYIF +  Q+LML PSS N
Sbjct: 131 LMYSVHYIFPIAYQILMLIPSSSN 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,793,537
Number of Sequences: 27780
Number of extensions: 303477
Number of successful extensions: 598
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)