Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18g23
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   4.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   4.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   7.1  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 303 PSFDHHNTHLIYLQNFFH 356
           P+FD     ++YLQ +F+
Sbjct: 523 PAFDEIKHDMVYLQKYFY 540


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 303 PSFDHHNTHLIYLQNFFH 356
           P+FD     ++YLQ +F+
Sbjct: 523 PAFDEIKHDMVYLQKYFY 540


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 180 NITLCRHNVDLQILLVFSHYIFFLPIQLLMLHPSSCNYLCLPSFDHHNTHLIYLQN 347
           +I  C +N+D   ++  +   FFLP+ L+ML+       C+ +  H N      +N
Sbjct: 186 DIKKCSYNMDSSYVIFSAMGSFFLPM-LVMLYVYG-RISCVIASRHRNLEATESEN 239


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 24  VCNNLV*KQWFNGPITNI*QFD 89
           VC N + K W+N  I+N+  FD
Sbjct: 358 VCQNEMNKWWWNMKISNL-SFD 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,686
Number of Sequences: 438
Number of extensions: 3890
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)