Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18g21
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 38 0.001
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 35 0.013
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 35 0.013
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 33 0.041
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 33 0.041
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.054
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 33 0.054
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 33 0.054
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 32 0.094
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 31 0.22
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 31 0.22
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 31 0.22
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.50
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 28 1.2
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 27 2.0
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 2.7
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 2.7
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 3.5
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 3.5
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 26 4.7
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 4.7
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 26 4.7
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 4.7
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 26 4.7
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 26 6.2
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 26 6.2
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 26 6.2
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 26 6.2
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 8.2
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 8.2
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 8.2
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 37.9 bits (84), Expect = 0.001
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 696 PTKLSCGHVFCFLCVKGVAHQSRKCAMCR 610
P CGH+FC+ C+ G + +C +CR
Sbjct: 266 PAATECGHIFCWSCINGWTSKKSECPLCR 294
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 34.7 bits (76), Expect = 0.013
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -2
Query: 255 IKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVSSVQSEDIDDVVSRI 91
I DE E++ ++ D +TE+II D N S H+ + + S + E IDD S +
Sbjct: 393 IPDEDEES-DQYSDVEDTEVIIEDQ-DNQEISNHVAEEKIDSDEEETIDDAKSEM 445
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 34.7 bits (76), Expect = 0.013
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 684 SCGHVFCFLCVKGVAHQSRKCAMCRTEI 601
+CGH++C C++ S C MC+T++
Sbjct: 1106 TCGHLYCSFCLEAWLKHSSSCPMCKTKL 1133
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 33.1 bits (72), Expect = 0.041
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 693 TKLSCGHVFCFLCVKGVAHQSRKCAMCRTEIP 598
TK+ CGH+F C++ C +CR E+P
Sbjct: 123 TKMPCGHIFGKNCLQKWLENHCTCPLCRKEVP 154
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 33.1 bits (72), Expect = 0.041
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 696 PTKLSCGHVFCFLCVKGVAHQSRKCAMCRTEIP 598
P CGH FC C+ QS +C CR +P
Sbjct: 179 PVVSPCGHTFCGPCLMQALTQSPQCPTCRFGLP 211
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 32.7 bits (71), Expect = 0.054
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 696 PTKLSCGHVFCFLCVKGVAHQSRKCAMCRTEI 601
P CGH +C+ C+ +S+ C CR ++
Sbjct: 95 PFTTHCGHTYCYECLLNWLKESKSCPTCRQKL 126
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 32.7 bits (71), Expect = 0.054
Identities = 20/83 (24%), Positives = 41/83 (49%)
Frame = -2
Query: 279 NINQVPIEIKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVSSVQSEDIDDVV 100
N + P + + NVNE ++ ETE + + +N+ +E ++NQ ++ V
Sbjct: 409 NHQEKPSSLPAVEQINVNEENNTPETEGLEDEKEENNTAAESLINQEETTSGEAVTKSTV 468
Query: 99 SRISTLDLNNADSNGLIDES*MK 31
S+ + A+ N +I+E+ +K
Sbjct: 469 E--SSANEEEAEPNEIIEENAVK 489
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 32.7 bits (71), Expect = 0.054
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 696 PTKLSCGHVFCFLCVKGVAHQSRKCAMCRTEI 601
P +L CGH+ F C++ + + C +CR +
Sbjct: 323 PKRLPCGHILHFHCLRNWLERQQTCPICRRSV 354
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 31.9 bits (69), Expect = 0.094
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = -2
Query: 681 CGHVFCFLCVK---GVAHQSRKCAMCRTEI 601
CGH+FC C+ G ++KC +CR ++
Sbjct: 221 CGHIFCNFCILSALGTTAATQKCPVCRRKV 250
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 30.7 bits (66), Expect = 0.22
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -2
Query: 681 CGHVFCFLCV-KGVAHQSRKCAMC 613
CGH FC+ C+ K + + R+C +C
Sbjct: 643 CGHGFCYQCIQKRIETRQRRCPIC 666
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 30.7 bits (66), Expect = 0.22
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = -2
Query: 696 PTKLSCGHVFCFLCVKGVAHQSRKCAMCR 610
P SC H FC C++ + C CR
Sbjct: 39 PLITSCSHTFCSFCIRDYLREHPMCPACR 67
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 30.7 bits (66), Expect = 0.22
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 690 KLSCGHVFCFLCVKGVAHQSRKCAMCRTE-IPLDYFE 583
K+ CGH F C++ + C +CRTE + +D E
Sbjct: 53 KIPCGHYFHNHCLESWCRVANTCPLCRTEFLKVDVLE 89
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 29.5 bits (63), Expect = 0.50
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -2
Query: 696 PTKLSCGHVFCFLCVKGVAHQSRK---CAMCRTE 604
P +L C HVFC C+ + Q +K C +CR +
Sbjct: 370 PVRLGCSHVFCLHCL--IILQKQKVDFCPLCRAK 401
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 684 SCGHVFCFLCVKG-VAHQSRKCAMCRT 607
+CGH FC C++ H++ C C T
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCET 680
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -2
Query: 681 CGHVFCFLCVKGVAHQSRKCAM--CRTEI 601
CGH+FC C K + ++ C + CR I
Sbjct: 167 CGHLFCSTCAKELRKKTVPCPVQHCRKRI 195
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 711 QKCXHPTKLSCGHVFCFLCVK-GVAHQSRKCAMCRTEI 601
+K +P LS G VFC+ C++ + KC + E+
Sbjct: 262 EKIKNPAVLSTGFVFCYPCIQVWLQRHPFKCPVTNLEL 299
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.1 bits (57), Expect = 2.7
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = -2
Query: 306 AKGIAGIRTNI-----NQVPIEIKDETEDNVNENHDNAETEIIIT-DNVQNSNGSEHILN 145
AK I GI N+ N+ K+ETED + N D E I T + S+ S+ +++
Sbjct: 62 AKAIGGIVENVPVWNPNRTSPVKKEETEDLPSFNGDTEEKPFIKTEEGAPASSQSQVVVS 121
Query: 144 QNVSS 130
N++S
Sbjct: 122 SNLTS 126
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 450 FLIQSCYAHHISTNHFFLHNTI 515
FLI+S Y H + N FF H T+
Sbjct: 263 FLIKSFYGH-VQANFFFFHETL 283
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 26.6 bits (56), Expect = 3.5
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = -2
Query: 306 AKGIAGIRTNINQVPIEIKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVSSV 127
A GI T ++ PI + ++ E N N+++ E+I DN+ N N NQ V+
Sbjct: 359 ANGIESDFTRVDHEPIIVNNDDE---NGNNESENEEVIEEDNL-NRNVIAEAQNQVVA-- 412
Query: 126 QSEDIDDVVSRISTLDLNNADS-NGLID 46
E+ + V + ++AD +G+++
Sbjct: 413 -DEERNAVARAAQIAEADDADDFDGILE 439
Score = 25.4 bits (53), Expect = 8.2
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = -2
Query: 273 NQVPIEIKDETEDNVN--ENHDNAETEIIITDNVQ---NSNGSEHILNQNVSSVQSEDID 109
N VP+E NV+ + D+ + + + +SN SE+I++ V+ + D
Sbjct: 306 NSVPVEFNSLHSQNVDYRDEVDSLRPQFNVDEQSSISHSSNASENIVDGAVTQANGIESD 365
Query: 108 DVVSRISTLDLNNADSNG 55
+ +NN D NG
Sbjct: 366 FTRVDHEPIIVNNDDENG 383
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 386 STMYKVPASSKVHSDSPLLKAFSNSELLRSSY 481
S +Y++ HSD P +FS S+ LRS Y
Sbjct: 156 SPLYQI--DEPYHSDEPYAFSFSRSDTLRSLY 185
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -2
Query: 690 KLSCGHVFCFLCVKGVAHQSRKCAMCRTEI-PLDYFENPVLLDKSN 556
+L C H F C+K + CA+CR + P N D +N
Sbjct: 411 QLPCKHYFHENCIKPWLRVNGTCAICRAPVDPNSQQRNNTSTDSAN 456
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -2
Query: 636 QSRKCAMCRTEIPLDYFEN---PVLLDK 562
QSR C +CR+++P D N P+L +K
Sbjct: 46 QSRACPLCRSKLPKDSRGNVLEPILSEK 73
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 26.2 bits (55), Expect = 4.7
Identities = 8/32 (25%), Positives = 20/32 (62%)
Frame = -2
Query: 237 DNVNENHDNAETEIIITDNVQNSNGSEHILNQ 142
D++ D+AE + + DN +NG++++ ++
Sbjct: 742 DDIEVEEDDAEAQELENDNTNTTNGNDNVSSE 773
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -2
Query: 186 DNVQNSNGSEHILNQNVSSVQSEDIDDVVSRISTLDLNNADSNGLIDES 40
+ VQ +N S L+Q + + + +SRI L+ + A SN L+D S
Sbjct: 200 NTVQANNSSTSSLSQGAQT-GIDSSSNYLSRIEMLESSLAKSNSLLDSS 247
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 300 GIAGIRTNINQVPIEIKDETEDNVNENH 217
G G+R+ ++Q+P E D T D + H
Sbjct: 328 GEKGLRSELSQIPTENIDSTTDRFDNYH 355
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 375 LLGSQQCTKSQPVVKYTLILHY*RHFLIQSCYAHHISTN 491
L+ + QC+ VV LI+ HFL + C H I+++
Sbjct: 740 LIETLQCSLCMDVVAELLIIVPCGHFLCRECLTHVITSS 778
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 6.2
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = -2
Query: 279 NINQVPIEIKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVSSVQSEDIDDV 103
N N+ + D E+HDN++ E + N+ +SN E + + S+ +S ++DD+
Sbjct: 57 NSNKESTNLDDLNMLEEPEHHDNSKKE---STNLDDSNMLEEPKHHDNSNKESTNLDDL 112
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 681 CGHVFCFLCVKGVAHQSRKCAMC 613
CGHV+C C K + R + C
Sbjct: 212 CGHVYCGSCAKVLKTSKRSQSKC 234
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/73 (20%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = -2
Query: 267 VPIEIKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQN-----VSSVQSEDIDDV 103
V ++K+ E++ +EN + E + +TD++ ++ L +N + S+ + + D +
Sbjct: 369 VAAKLKEIKENSFSENQQSDEADYNVTDDLILQLATQQSLEENKKSKELFSLSASEFDKL 428
Query: 102 VSRISTLDLNNAD 64
S T ++ + D
Sbjct: 429 NSEKKTFEILSTD 441
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = -2
Query: 696 PTKLSCGHVFCFLCVKGVAH--QSRKCAMCRTEI 601
P CGH +C+ C+ + C +C+ I
Sbjct: 208 PYTTDCGHTYCYACIMSRLKLVNNVSCPICKHRI 241
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 8.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -2
Query: 681 CGHVFCFLCV 652
CGHV+CF C+
Sbjct: 230 CGHVYCFSCL 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,275
Number of Sequences: 5004
Number of extensions: 54612
Number of successful extensions: 228
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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