Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18g21
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.54 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.94 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 261 IEIKDETEDNVNENHDNAE-TEIIITDNVQNSNGSEHILNQNVSSVQSEDIDDVVSRIST 85
           + ++ E +D+++  H     T +   D ++  N +  ILN+ V +V  +  ++ VS +  
Sbjct: 449 LNLEQEKKDSISHYHLYTNLTALRKRDVLKKGNFTIEILNKTVLAVVRQSEEEAVSLLIN 508

Query: 84  LDLNN 70
              NN
Sbjct: 509 FSKNN 513


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = -2

Query: 252 KDETEDNVNENHDNAETEIIITDNVQNSNGSE-HILNQNVSSVQSEDIDDVVSRISTLDL 76
           +++ + N N  +DN +      DN QN N    +  N N  +   ++ +         + 
Sbjct: 465 QNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQ 524

Query: 75  NNADSNGLIDES*MKISKLH 16
           NN + N   D      SKLH
Sbjct: 525 NNQNDNNRNDNQVHHSSKLH 544



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/45 (20%), Positives = 22/45 (48%)
 Frame = -2

Query: 249 DETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVSSVQSED 115
           ++   N N ++ NA+ +     N  N N ++   N+   + Q+++
Sbjct: 424 NQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDN 468


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 501 LHNTIGILLLHQHWQHTED*TCPIEQGFQSS 593
           + N I ++LL  HW        P+ QGF S+
Sbjct: 279 IFNLICMMLLIGHWSGCLQFLVPMLQGFPSN 309


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 501 LHNTIGILLLHQHWQHTED*TCPIEQGFQSS 593
           + N I ++LL  HW        P+ QGF S+
Sbjct: 247 IFNLICMMLLIGHWSGCLQFLVPMLQGFPSN 277


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/46 (15%), Positives = 21/46 (45%)
 Frame = -2

Query: 306  AKGIAGIRTNINQVPIEIKDETEDNVNENHDNAETEIIITDNVQNS 169
            A  +  + TN+  +   +K +++    ++    + + I+T+    S
Sbjct: 953  ASNVTNVTTNLTTILPPVKVQSQQQSQQSQQQQQQQTIVTNQAGKS 998


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 513 WYYEGRNGWWKYDER 469
           WY+  RN  +K D+R
Sbjct: 282 WYWIDRNSAYKIDQR 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,224
Number of Sequences: 438
Number of extensions: 3212
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)