Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18g18
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      54   2e-08
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      36   0.004
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    27   1.9  
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   1.9  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.6  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   7.8  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 3/194 (1%)
 Frame = -3

Query: 688 VVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVLN 509
           + I++ GN+ G +RK H+     F+    + +  +  P+F T +GK+ V IC+       
Sbjct: 104 IYITENGNLGGVYRKVHL-----FDTERKHFKKGSDFPIFETSFGKLGVMICWDTAFPEV 158

Query: 508 WMMFGQNGAEIVFNPSATIAGEGGSEYM--WNVEARNAAITNCYFTAAINRVGYEEFPNE 335
             +   NGA+++      +A    + Y   W++  +  A  NC    A NRVG +E  + 
Sbjct: 159 ARIHALNGADLL-----VVATNWENPYSDDWDLVTKARAFENCIPLVAANRVGTDEKLS- 212

Query: 334 FTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYY 155
                          F+G S   GP G     L   ++G++   VDL+  + +R     +
Sbjct: 213 ---------------FFGHSKIIGPTGKVIKALDEEKEGVISYTVDLDDAKPLRKNYYTF 257

Query: 154 MTQRL-DMYVNSLS 116
              R+ D+Y   LS
Sbjct: 258 FEDRMPDLYKRLLS 271


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 48/174 (27%), Positives = 66/174 (37%), Gaps = 8/174 (4%)
 Frame = -3

Query: 670 GNVIGKHRKNHIPRVGDFN-----ESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVLNW 506
           G +I ++ K H+  V   N     ESN  + G    P   T  GK+   ICF        
Sbjct: 106 GEIISRYSKAHLFDVEIKNGPTLKESNTTLRGEAILPPCKTPLGKVGSAICFDIRFPEQA 165

Query: 505 MMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAI-TNCYFTAAINRVGYEEFPNEFT 329
           +     GA I+  PSA     G +   W V  R  A+ + CY  A               
Sbjct: 166 IKLRNMGAHIITYPSAFTEKTGAAH--WEVLLRARALDSQCYVIA--------------P 209

Query: 328 SADGKPAHKDLGLFYGSSYFCGPDGVRCPGLS--RTRDGLLIAAVDLNLNRQIR 173
           +  GK  H +    YG S    P G      S   + +GL+ A +DLNL   +R
Sbjct: 210 AQGGK--HNEKRASYGHSMIVDPWGTVIAQYSDISSPNGLIFADLDLNLVDHVR 261


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 515 DVVPSEADVHRDLAVSGREYRMAGVTFHVVV 607
           DVVP  A   R L    + Y  AG TFH V+
Sbjct: 25  DVVPKTAANFRALCTGEKGYGYAGSTFHRVI 55


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 390 FVIAAFLASTFHMYSLPPSPAIVAD 464
           F+ AA  + + H+ S+PPSP +++D
Sbjct: 156 FIDAANSSDSCHLVSIPPSPQLLSD 180


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 507  QFKTWCRPKQMFTAILPYLVANTGWPVLPS 596
            +F T    K +FTA+ P+L A T + ++PS
Sbjct: 1521 RFPTRVLCKPVFTAVPPFLFAGTDFALIPS 1550


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 5   FVAKIHRFRWSISAWNRLKLLFI 73
           FVA  H   W + AW  L +LFI
Sbjct: 463 FVALWHDISWELFAWGWLIVLFI 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,483
Number of Sequences: 5004
Number of extensions: 54154
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)