Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18g18
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical p... 281 3e-76
Z81512-1|CAB04173.1| 601|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 29 4.1
AF040660-7|AAN65287.1| 366|Caenorhabditis elegans Hypothetical ... 29 4.1
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 29 4.1
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 29 4.1
Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical pr... 27 9.6
U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical pr... 27 9.6
AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical ... 27 9.6
AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effe... 27 9.6
AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta p... 27 9.6
AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha ... 27 9.6
>U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical
protein F13H8.7 protein.
Length = 387
Score = 281 bits (689), Expect = 3e-76
Identities = 129/205 (62%), Positives = 151/205 (73%)
Frame = -3
Query: 688 VVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVLN 509
VVIS TG VIG+ RKNHIPRVGDFNES YYME GHPVF T+YG+I +NIC+GRHH N
Sbjct: 184 VVISHTGRVIGRSRKNHIPRVGDFNESTYYMESTLGHPVFETKYGRIGINICYGRHHPQN 243
Query: 508 WMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFT 329
WMM+ NGAEI+FNPSAT+ SE +W +EARNAAI N FT INRVG E FPNEFT
Sbjct: 244 WMMYALNGAEIIFNPSATVGAL--SEPLWGIEARNAAIANHVFTVGINRVGTEVFPNEFT 301
Query: 328 SADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMT 149
S +G+PAHKD G FYGSSY PDG R P LSR R+G+LIA +DLNL RQ +D + MT
Sbjct: 302 SGNGQPAHKDFGHFYGSSYIAAPDGSRTPALSRVREGVLIAELDLNLCRQCKDAWGFRMT 361
Query: 148 QRLDMYVNSLSKVLELDYKPQVVHE 74
RLDMY +++V DY+P + E
Sbjct: 362 NRLDMYAQKITEVSNPDYRPDIRRE 386
>Z81512-1|CAB04173.1| 601|Caenorhabditis elegans Hypothetical
protein F25C8.1 protein.
Length = 601
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/60 (23%), Positives = 32/60 (53%)
Frame = +2
Query: 410 SFNVPHVLAAAFSGDRR*RIKNDLSSILSEHHPVQDVVPSEADVHRDLAVSGREYRMAGV 589
SFNV + + G++R + + ++ + +H +QD+ P+ + RD + ++AG+
Sbjct: 21 SFNVDKLTEYYYGGEKRLKARREVEKCVEDHKELQDLKPTPF-MSRDELIDNSVRKLAGM 79
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
protein F53B6.2a protein.
Length = 1045
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 124 CSRTCPGVGSCNNNVCL*SVCSGSSPRPRLTSRLWC 231
C++TC G S CL S CSG S R ++ ++ C
Sbjct: 35 CTKTCGGGVSRQLRRCLTSKCSGESVRFKVCAQKTC 70
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -3
Query: 508 WMMFGQNGAEIVFNPSATIAGEG-GSEYMWNVEARNAAITNCYFTAAINRVGYEEF 344
WM FG +G NP A G G+ + N A + N FT E F
Sbjct: 332 WMKFGADGRLYAINPEAGFFGVAPGTSHKTNAMAMESCRANTIFTNVAETADGEYF 387
>AF040660-7|AAN65287.1| 366|Caenorhabditis elegans Hypothetical
protein W05G11.6c protein.
Length = 366
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -3
Query: 508 WMMFGQNGAEIVFNPSATIAGEG-GSEYMWNVEARNAAITNCYFTAAINRVGYEEF 344
WM FG +G NP A G G+ + N A + N FT E F
Sbjct: 47 WMKFGADGRLYAINPEAGFFGVAPGTSHKTNAMAMESCRANTIFTNVAETADGEYF 102
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -3
Query: 508 WMMFGQNGAEIVFNPSATIAGEG-GSEYMWNVEARNAAITNCYFTAAINRVGYEEF 344
WM FG +G NP A G G+ + N A + N FT E F
Sbjct: 222 WMKFGADGRLYAINPEAGFFGVAPGTSHKTNAMAMESCRANTIFTNVAETADGEYF 277
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -3
Query: 508 WMMFGQNGAEIVFNPSATIAGEG-GSEYMWNVEARNAAITNCYFTAAINRVGYEEF 344
WM FG +G NP A G G+ + N A + N FT E F
Sbjct: 332 WMKFGADGRLYAINPEAGFFGVAPGTSHKTNAMAMESCRANTIFTNVAETADGEYF 387
>Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical
protein F11C1.6b protein.
Length = 492
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 306 TKTWACSTDRATSAAPTALGAPVCPAP 226
T T + +T R T A+ T+ P+CPAP
Sbjct: 201 TSTSSTTTGRMTEASSTSPILPLCPAP 227
>Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical
protein F11C1.6a protein.
Length = 572
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 306 TKTWACSTDRATSAAPTALGAPVCPAP 226
T T + +T R T A+ T+ P+CPAP
Sbjct: 281 TSTSSTTTGRMTEASSTSPILPLCPAP 307
>U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical
protein T10E10.4 protein.
Length = 966
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 115 C*DCSRTCPGVGSCNNNVC 171
C S +CPG C N VC
Sbjct: 249 CSQVSSSCPGTSQCQNKVC 267
>AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical
protein Y2H9A.1 protein.
Length = 898
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 655 KHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIA 545
K R + + DF ++Y ME + G V A RYG I+
Sbjct: 577 KRRLDSVSISRDFQANHYMMELHKGLTVDAARYGNIS 613
>AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effect
sterile 4 protein.
Length = 898
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 655 KHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIA 545
K R + + DF ++Y ME + G V A RYG I+
Sbjct: 577 KRRLDSVSISRDFQANHYMMELHKGLTVDAARYGNIS 613
>AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta
protein.
Length = 492
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 306 TKTWACSTDRATSAAPTALGAPVCPAP 226
T T + +T R T A+ T+ P+CPAP
Sbjct: 201 TSTSSTTTGRMTEASSTSPILPLCPAP 227
>AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha
protein.
Length = 568
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 306 TKTWACSTDRATSAAPTALGAPVCPAP 226
T T + +T R T A+ T+ P+CPAP
Sbjct: 277 TSTSSTTTGRMTEASSTSPILPLCPAP 303
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,412,973
Number of Sequences: 27780
Number of extensions: 323565
Number of successful extensions: 1031
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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