Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18g11
(425 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr 2... 102 2e-23
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 28 0.53
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 26 2.1
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 26 2.8
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 3.7
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 25 3.7
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 25 4.9
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 25 4.9
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 25 4.9
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|... 25 4.9
SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe... 25 4.9
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 24 8.6
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 24 8.6
>SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr
2|||Manual
Length = 85
Score = 102 bits (245), Expect = 2e-23
Identities = 41/80 (51%), Positives = 59/80 (73%)
Frame = -2
Query: 292 MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENES 113
M +R ++LE LQ++Y+G G+A TTKYEW++NQHRD+ S +GHP LL+Y A E
Sbjct: 1 MADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEP 60
Query: 112 KARVKFNLMERMLQPCGPPP 53
+ +V+ NL+E+M+ PCGPPP
Sbjct: 61 RVQVRKNLLEKMIMPCGPPP 80
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 28.3 bits (60), Expect = 0.53
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 119 IFYDRKVTQQIRMTHVTAARVAMLVHKPFI 208
+F K+T + MTH+ +A+ L +KP I
Sbjct: 364 LFSSFKITTDLEMTHLESAKKKYLAYKPLI 393
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 26.2 bits (55), Expect = 2.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 110 FRFIFYDRKVTQQIRMTHVTAARVAMLVHKPFIFCSVG 223
++++ K + +R +A R AML HKP + S G
Sbjct: 155 YKYLECSAKTNEGVREVFESATRAAMLKHKPKVKPSSG 192
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 2.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 233 HRPRRHYKI*MAYEPTSRLVLQLHGSS 153
+RPR+ Y + PT LV Q+H S
Sbjct: 249 YRPRKAYPTTLILAPTRELVCQIHEES 275
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.4 bits (53), Expect = 3.7
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 6/105 (5%)
Frame = -2
Query: 334 SINDFNKHLAFKNKMGERYNIHSQLEHLQSKYIGTGHADTTKY------EWLMNQHRDSC 173
+I D + N + E +E ++ Y TG +DT WL
Sbjct: 697 AIKDATTLINIGNCLAELKQFSRAIEVFETVYSSTGESDTYGVLSCLGRVWLQRGRESKN 756
Query: 172 CSYMGHPDLLSYFAIVENESKARVKFNLMERMLQPCGPPPEKPED 38
Y+ + A+ +N + FN+ Q C +KPE+
Sbjct: 757 VDYLKESVRYATLALEKNPENPSLLFNVAFVQFQLCELIRQKPEN 801
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 3.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 71 LKHSFHQIEFYARFRFIFYDRKVTQQIR 154
LK+ H I+ + + F FY+ QQIR
Sbjct: 397 LKNKVHTIKEFEKIVFYFYEASDLQQIR 424
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 4.9
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +2
Query: 164 VTAARVAMLVHKPFIFCSVGVACAYIFAL*MFKLTVNVVSFTH 292
+T +A ++ P F G CA +FA + + + TH
Sbjct: 199 LTRLYLARFLNSPQYFIPYGTLCANVFATLLLSIMYMIPQITH 241
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 4.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 56 RWAAWLKHSFHQIEFYARFRFIFYD 130
+W W+ H+FH I+ RF+ D
Sbjct: 429 QWKTWISHTFH-IDPMGPSRFVLMD 452
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 4.9
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +2
Query: 164 VTAARVAMLVHKPFIFCSVGVACAYIFAL*MFKLTVNVVSFTH 292
+T +A ++ P F G CA +FA + + + TH
Sbjct: 199 LTRLYLARFLNSPQYFIPYGTLCANVFATLLLSIMYMIPQITH 241
>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
Pef1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 4.9
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -2
Query: 157 HPDLLSYFAIVENESKARVKFNLMERMLQ 71
HP+++S +++ E+K + F ME+ L+
Sbjct: 58 HPNIMSLSDVLQTENKLMLVFEYMEKDLK 86
>SPCC613.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 189
Score = 25.0 bits (52), Expect = 4.9
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -2
Query: 226 HADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENESKARVKFN-LMERMLQPCGP 59
H D E H Y D+LS + + EN+ VK N ++ +L+ C P
Sbjct: 32 HIDKYTDESFFRLHDLGKKGYWSDQDILSLYGLFENDEVPFVKKNEVLVDVLKKCDP 88
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 24.2 bits (50), Expect = 8.6
Identities = 14/60 (23%), Positives = 26/60 (43%)
Frame = -2
Query: 364 ILTELEYKL*SINDFNKHLAFKNKMGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQH 185
+L +LE+KL + K + K+ ER + + + KY+ + T + L H
Sbjct: 124 LLQQLEFKLSVEEQYRKGIEKMAKLYEREHDRRSIAEAEKKYVESAQKITLLKQALKRYH 183
>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 24.2 bits (50), Expect = 8.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 334 SINDFNKHLAFKNKMGERYN 275
S D N LAF N GE+YN
Sbjct: 86 SPKDINVVLAFANASGEQYN 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,630,121
Number of Sequences: 5004
Number of extensions: 30849
Number of successful extensions: 85
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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