Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18g11
         (425 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0834 - 21626491-21626508,21626720-21626843,21626927-216270...    98   3e-21
03_05_1069 + 30118930-30120120                                         29   1.6  
01_06_1306 + 36151907-36154369                                         28   3.6  
01_01_0101 - 766382-767487,767599-767756,767900-768615                 28   3.6  
10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971...    27   8.3  
03_05_0133 - 21122150-21122314,21122715-21123036,21123088-21123227     27   8.3  

>08_02_0834 -
           21626491-21626508,21626720-21626843,21626927-21627012,
           21627869-21627874
          Length = 77

 Score = 97.9 bits (233), Expect = 3e-21
 Identities = 40/69 (57%), Positives = 55/69 (79%)
 Frame = -2

Query: 286 ERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENESKA 107
           +R+NI+SQLEHLQ+KY+GTGHAD  ++EW +N  RDS  SY+GH  +L+YF+I ENES  
Sbjct: 5   DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFSIAENESIG 64

Query: 106 RVKFNLMER 80
           R ++N M+R
Sbjct: 65  RERYNFMQR 73


>03_05_1069 + 30118930-30120120
          Length = 396

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 232 TGHADTTKYEWLMNQHRDSCCSYM-GHPDLLSYFAIVE-NESKARVKFNLME 83
           +G AD T Y W  +    SC S + GH + +   AIVE N+  A V  + ++
Sbjct: 281 SGSADNTIYVWRRDGGVHSCLSVLTGHTEPIRCLAIVEDNKDNAAVPVDAVD 332


>01_06_1306 + 36151907-36154369
          Length = 820

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 130 SQSNSTNPDDPCNCSTSRD 186
           S +NS N   PCNCS+S D
Sbjct: 166 SAANSCNSLSPCNCSSSSD 184


>01_01_0101 - 766382-767487,767599-767756,767900-768615
          Length = 659

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 125 YDRKVTQQIRMTHVTAARVAMLVHKPFIFCSVGVAC 232
           YDR + QQ+ +  ++AA VA +       C +G+ C
Sbjct: 564 YDRLIEQQVGVGEISAATVANMHELERKLCIIGLHC 599


>10_08_0352 + 17091637-17091945,17092049-17096617,17096975-17097187,
            17097266-17097494,17097857-17097981
          Length = 1814

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 208  YEWLMNQHRDSCCSYMGHPDLLSYFA-IVENESKARVKFNLMERMLQPCGPPPEKPED 38
            Y  LMNQ+         + D   +F+      + A   F++++  ++P  PPPEK E+
Sbjct: 1617 YRKLMNQNSKVGKEATSNSDCPQFFSPSFSLLTFALESFSVVDEEVKPISPPPEKEEE 1674


>03_05_0133 - 21122150-21122314,21122715-21123036,21123088-21123227
          Length = 208

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 417 NLCIVYEYSLFWA 379
           N+CIVY Y L+W+
Sbjct: 99  NICIVYVYGLYWS 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,955,168
Number of Sequences: 37544
Number of extensions: 177411
Number of successful extensions: 407
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)