Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18g11
(425 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC000198-1|AAH00198.1| 86|Homo sapiens splicing factor 3b, sub... 164 1e-40
AL031390-2|CAI19755.1| 86|Homo sapiens splicing factor 3b, sub... 164 1e-40
U87408-1|AAB47568.1| 453|Homo sapiens unknown protein. 32 0.70
BC103831-1|AAI03832.1| 887|Homo sapiens Bardet-Biedl syndrome 9... 32 0.70
AF095771-1|AAD25981.1| 802|Homo sapiens PTH-responsive osteosar... 32 0.70
U85995-1|AAB61919.1| 429|Homo sapiens unknown protein. 30 3.8
BC060789-1|AAH60789.1| 742|Homo sapiens collectin sub-family me... 29 8.7
AL713657-1|CAD28466.1| 417|Homo sapiens hypothetical protein pr... 29 8.7
AB038518-1|BAB39147.1| 742|Homo sapiens scavenger receptor with... 29 8.7
AB034251-1|BAD83592.1| 742|Homo sapiens nurse cell scavenger re... 29 8.7
AB005145-1|BAB72147.1| 742|Homo sapiens collectin placenta 1 pr... 29 8.7
>BC000198-1|AAH00198.1| 86|Homo sapiens splicing factor 3b,
subunit 5, 10kDa protein.
Length = 86
Score = 164 bits (398), Expect = 1e-40
Identities = 71/85 (83%), Positives = 79/85 (92%)
Frame = -2
Query: 292 MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENES 113
M +RY IHSQLEHLQSKYIGTGHADTTK+EWL+NQHRDS CSYMGH DLL+YFAI ENES
Sbjct: 1 MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60
Query: 112 KARVKFNLMERMLQPCGPPPEKPED 38
KARV+FNLME+MLQPCGPP +KPE+
Sbjct: 61 KARVRFNLMEKMLQPCGPPADKPEE 85
>AL031390-2|CAI19755.1| 86|Homo sapiens splicing factor 3b,
subunit 5, 10kDa protein.
Length = 86
Score = 164 bits (398), Expect = 1e-40
Identities = 71/85 (83%), Positives = 79/85 (92%)
Frame = -2
Query: 292 MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENES 113
M +RY IHSQLEHLQSKYIGTGHADTTK+EWL+NQHRDS CSYMGH DLL+YFAI ENES
Sbjct: 1 MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60
Query: 112 KARVKFNLMERMLQPCGPPPEKPED 38
KARV+FNLME+MLQPCGPP +KPE+
Sbjct: 61 KARVRFNLMEKMLQPCGPPADKPEE 85
>U87408-1|AAB47568.1| 453|Homo sapiens unknown protein.
Length = 453
Score = 32.3 bits (70), Expect = 0.70
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -2
Query: 298 NKMGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQH-RDSCCSYMGHPDLLSYFAIVE 122
+K +RY I S E + ++ T E+ Q +D CS+ G L YF +++
Sbjct: 159 SKTSQRYRIQS--EQFEDLWLITNELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELID 216
Query: 121 NESKARVKFNLMERML 74
+ + R+ +E +L
Sbjct: 217 HHFELRINGEKLEELL 232
>BC103831-1|AAI03832.1| 887|Homo sapiens Bardet-Biedl syndrome 9
protein.
Length = 887
Score = 32.3 bits (70), Expect = 0.70
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -2
Query: 298 NKMGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQH-RDSCCSYMGHPDLLSYFAIVE 122
+K +RY I S E + ++ T E+ Q +D CS+ G L YF +++
Sbjct: 593 SKTSQRYRIQS--EQFEDLWLITNELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELID 650
Query: 121 NESKARVKFNLMERML 74
+ + R+ +E +L
Sbjct: 651 HHFELRINGEKLEELL 666
>AF095771-1|AAD25981.1| 802|Homo sapiens PTH-responsive
osteosarcoma B1 protein protein.
Length = 802
Score = 32.3 bits (70), Expect = 0.70
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -2
Query: 298 NKMGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQH-RDSCCSYMGHPDLLSYFAIVE 122
+K +RY I S E + ++ T E+ Q +D CS+ G L YF +++
Sbjct: 508 SKTSQRYRIQS--EQFEDLWLITNELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELID 565
Query: 121 NESKARVKFNLMERML 74
+ + R+ +E +L
Sbjct: 566 HHFELRINGEKLEELL 581
>U85995-1|AAB61919.1| 429|Homo sapiens unknown protein.
Length = 429
Score = 29.9 bits (64), Expect = 3.8
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -2
Query: 298 NKMGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQH-RDSCCSYMGHPDLLSYFAIVE 122
+K +RY I S E + ++ T E+ Q +D CS+ G L YF +++
Sbjct: 135 SKTSQRYRIQS--EQFEDLWLITNELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELID 192
Query: 121 NESKARVKFNLMERML 74
+ + R+ + +L
Sbjct: 193 HHFELRINGEKLXELL 208
>BC060789-1|AAH60789.1| 742|Homo sapiens collectin sub-family
member 12 protein.
Length = 742
Score = 28.7 bits (61), Expect = 8.7
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = -2
Query: 379 CYVISILTEL--EYKL*SINDFNKHLAFKNKMGERYNIHSQLEHLQSKYIG-TGHADTTK 209
CY S+ E+ + KL D + HL F N E+ I Q+ +S +IG T +
Sbjct: 618 CYYFSVEKEIFEDAKL-FCEDKSSHLVFINTREEQQWIKKQMVGRESHWIGLTDSERENE 676
Query: 208 YEWLMNQHRDSCCSYMGHPD 149
++WL D G PD
Sbjct: 677 WKWLDGTSPDYKNWKAGQPD 696
>AL713657-1|CAD28466.1| 417|Homo sapiens hypothetical protein
protein.
Length = 417
Score = 28.7 bits (61), Expect = 8.7
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = -2
Query: 379 CYVISILTEL--EYKL*SINDFNKHLAFKNKMGERYNIHSQLEHLQSKYIG-TGHADTTK 209
CY S+ E+ + KL D + HL F N E+ I Q+ +S +IG T +
Sbjct: 293 CYYFSVEKEIFEDAKL-FCEDKSSHLVFINTREEQQWIKKQMVGRESHWIGLTDSERENE 351
Query: 208 YEWLMNQHRDSCCSYMGHPD 149
++WL D G PD
Sbjct: 352 WKWLDGTSPDYKNWKAGQPD 371
>AB038518-1|BAB39147.1| 742|Homo sapiens scavenger receptor with
C-type lectin type I protein.
Length = 742
Score = 28.7 bits (61), Expect = 8.7
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = -2
Query: 379 CYVISILTEL--EYKL*SINDFNKHLAFKNKMGERYNIHSQLEHLQSKYIG-TGHADTTK 209
CY S+ E+ + KL D + HL F N E+ I Q+ +S +IG T +
Sbjct: 618 CYYFSVEKEIFEDAKL-FCEDKSSHLVFINTREEQQWIKKQMVGRESHWIGLTDSERENE 676
Query: 208 YEWLMNQHRDSCCSYMGHPD 149
++WL D G PD
Sbjct: 677 WKWLDGTSPDYKNWKAGQPD 696
>AB034251-1|BAD83592.1| 742|Homo sapiens nurse cell scavenger
receptor 2 protein.
Length = 742
Score = 28.7 bits (61), Expect = 8.7
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = -2
Query: 379 CYVISILTEL--EYKL*SINDFNKHLAFKNKMGERYNIHSQLEHLQSKYIG-TGHADTTK 209
CY S+ E+ + KL D + HL F N E+ I Q+ +S +IG T +
Sbjct: 618 CYYFSVEKEIFEDAKL-FCEDKSSHLVFINTREEQQWIKKQMVGRESHWIGLTDSERENE 676
Query: 208 YEWLMNQHRDSCCSYMGHPD 149
++WL D G PD
Sbjct: 677 WKWLDGTSPDYKNWKAGQPD 696
>AB005145-1|BAB72147.1| 742|Homo sapiens collectin placenta 1
protein.
Length = 742
Score = 28.7 bits (61), Expect = 8.7
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = -2
Query: 379 CYVISILTEL--EYKL*SINDFNKHLAFKNKMGERYNIHSQLEHLQSKYIG-TGHADTTK 209
CY S+ E+ + KL D + HL F N E+ I Q+ +S +IG T +
Sbjct: 618 CYYFSVEKEIFEDAKL-FCEDKSSHLVFINTREEQQWIKKQMVGRESHWIGLTDSERENE 676
Query: 208 YEWLMNQHRDSCCSYMGHPD 149
++WL D G PD
Sbjct: 677 WKWLDGTSPDYKNWKAGQPD 696
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,105,174
Number of Sequences: 237096
Number of extensions: 1033266
Number of successful extensions: 2010
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2010
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3316445452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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