Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18g11
         (425 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-3|AAA62525.1|   87|Caenorhabditis elegans Hypothetical pr...    36   0.016
Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U97008-14|AAB52302.2|  298|Caenorhabditis elegans Serpentine rec...    27   7.4  
Z81462-7|CAB03845.1| 1008|Caenorhabditis elegans Hypothetical pr...    26   9.8  
Z81457-12|CAB03819.1| 1008|Caenorhabditis elegans Hypothetical p...    26   9.8  
U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical pr...    26   9.8  
AF286900-1|AAG01333.1| 1008|Caenorhabditis elegans sex determini...    26   9.8  
AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical ...    26   9.8  
AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical...    26   9.8  

>U21317-3|AAA62525.1|   87|Caenorhabditis elegans Hypothetical
           protein B0495.6 protein.
          Length = 87

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = -2

Query: 289 GERYNIHSQLEHLQSKYIGT 230
           GER+++ +QLEHLQSKY GT
Sbjct: 5   GERFHVLAQLEHLQSKYTGT 24


>Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical
           protein R04B5.8 protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +2

Query: 71  LKHSFHQIEFYARFRFIFYDRKVTQQIRMTHVTAARVAMLVHKPFIFCSV 220
           L+ +   +  +A     +Y  K+    +++ V   R  ++VH P IFC++
Sbjct: 97  LRDASSMVALFAIVHVFYYRYKILSHQKLSSVQIMRNFIIVHLPAIFCAI 146


>U97008-14|AAB52302.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein56 protein.
          Length = 298

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 56  RWAAWLKHSFHQIEFYARFRFIFYD 130
           ++  W+  SF  I FY +F +I+YD
Sbjct: 124 KFIVWIFISFVAILFYEKFCYIYYD 148


>Z81462-7|CAB03845.1| 1008|Caenorhabditis elegans Hypothetical protein
            C04H5.6 protein.
          Length = 1008

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 247  SKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIV 125
            SK   TGH  T K++   + H +SC  +   P  + YF +V
Sbjct: 917  SKLDNTGHYKTVKHKHTTHPHPNSCL-FEETPRWVVYFELV 956


>Z81457-12|CAB03819.1| 1008|Caenorhabditis elegans Hypothetical
            protein C04H5.6 protein.
          Length = 1008

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 247  SKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIV 125
            SK   TGH  T K++   + H +SC  +   P  + YF +V
Sbjct: 917  SKLDNTGHYKTVKHKHTTHPHPNSCL-FEETPRWVVYFELV 956


>U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical
           protein T13C5.2 protein.
          Length = 434

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 220 DTTKYEWLMNQHRDSCCSYMGH 155
           +   Y++  N H ++CC+Y  H
Sbjct: 180 NNNNYDYNYNYHHNNCCNYHNH 201


>AF286900-1|AAG01333.1| 1008|Caenorhabditis elegans sex determining
            protein MOG-4 protein.
          Length = 1008

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 247  SKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIV 125
            SK   TGH  T K++   + H +SC  +   P  + YF +V
Sbjct: 917  SKLDNTGHYKTVKHKHTTHPHPNSCL-FEETPRWVVYFELV 956


>AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical
           protein R06B10.2 protein.
          Length = 1014

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 331 INDFNKHLA-FKNKMGERYNIHSQLEHLQSKYI 236
           ++D   HL  FK+   E YN+++Q +HL++ +I
Sbjct: 144 LSDMAPHLPKFKDWTLEEYNVYAQNQHLRNIHI 176


>AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.2 protein.
          Length = 1140

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 331 INDFNKHLA-FKNKMGERYNIHSQLEHLQSKYI 236
           ++D   HL  FK    E+YN+++Q +HL++ +I
Sbjct: 380 LSDMASHLPKFKYWTLEKYNVYAQNQHLRNIHI 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,987,511
Number of Sequences: 27780
Number of extensions: 172480
Number of successful extensions: 473
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)