Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18g07
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 30 0.32
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 27 2.3
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 26 4.0
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.2
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 26 5.2
SPAC824.06 |tim14||TIM23 translocase complex subunit Tim14|Schiz... 25 6.9
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 25 6.9
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.9
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 9.1
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.1
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 25 9.1
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 29.9 bits (64), Expect = 0.32
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -3
Query: 226 DRLNNENTSTDYDTEDEERVNTFNSRKRRV-VAKRAFNSKSKKIPIGKVVSTPRKRLK 56
D L N+ T DYD+EDEE N + +V +K+ K +K + K P+K K
Sbjct: 376 DTLQNDFTIYDYDSEDEEYNNPSTQKTEKVSQSKKGAKVKEEK-GLKKDRKLPKKMRK 432
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 356 FERFSSFMHSNVFVAAVHFMI 418
FER SF+H+N V A HF +
Sbjct: 558 FERAISFLHTNYPVEATHFAV 578
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -3
Query: 469 EKMPPRAKKLFVEAFTKYHKMNGGDEDIAMHKARKALEE 353
E++ P++ V AF +Y K++ +ED H ++ E+
Sbjct: 47 EEIKPKSGDRLVAAFEEYEKLHPVEEDSTAHVNKEEAEK 85
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 2 LRSSSSLVVIMRWCVCVLF*SFTRRR 79
++ SSL++I W +LF SF RR
Sbjct: 507 IKQYSSLILISLWISLILFVSFLNRR 532
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 151 RKRRVVAKRAFNSKSKKIPIGKVV 80
RKR++ A S+ K+I +GKVV
Sbjct: 68 RKRKIEAGEVVKSQKKRIRLGKVV 91
>SPAC824.06 |tim14||TIM23 translocase complex subunit
Tim14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 451 AKKLFVEAFTKYHKMNGG 398
A K+ V+AF KY +NGG
Sbjct: 17 AGKIGVDAFRKYRNLNGG 34
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 145 RRVVAKRAFNSKSKKIPIGKVVSTPRKRL 59
RR+V + KS+ IP+G++ R+R+
Sbjct: 693 RRIVGRYGLTGKSQVIPMGQLSDGQRRRV 721
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 136 VAKRAFNSKSKKIPIGKVVSTPRKRLKQHTNTPPHYD 26
++K AF SKS+ I + P ++ + TPPH D
Sbjct: 1 MSKSAFTSKSQLKGIDGSFNDPFRQPSMNLPTPPHDD 37
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/60 (21%), Positives = 32/60 (53%)
Frame = -3
Query: 241 KTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKR 62
+T ND N + +Y+TE +E N+ K +++ + ++K++ I ++ + R++
Sbjct: 353 ETVKNDEKNLREMNANYETEMKEARQKLNN-KEALISHYDDDFRAKELKISRLSESLREK 411
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 400 GDEDIAMHKARKALEEKYVKINTLKNSWI 314
GD I + K R+ALE KYV + + WI
Sbjct: 2111 GDPAIFVQKNREALESKYVSAHL--HEWI 2137
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 344 NVLFFERFSSFMHSNVFVAAVHFMILCKRLXK 439
N LF S N+F+ ++H++ LC R K
Sbjct: 276 NQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCK 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,855,526
Number of Sequences: 5004
Number of extensions: 30650
Number of successful extensions: 115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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