Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18g06
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    32   0.067
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    31   0.088
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    28   1.1  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.4  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   7.7  

>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 31.9 bits (69), Expect = 0.067
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 525 LERHXLRHKXXGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQK 391
           LER   RHK    W +  + RA + +  R+ + EQ+     L Q+
Sbjct: 493 LERMTQRHKNTSSWTRKMLERASHGEGTREAVNEQIRKGDELMQR 537


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 31.5 bits (68), Expect = 0.088
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -2

Query: 243 KYLKGKMFKHKEDSGSEDEAEKNNDTTKACSDAGLNT 133
           KYL+ ++   K +SGSE E++ + D++K  SD+  +T
Sbjct: 53  KYLRERIDALKVESGSERESQSDKDSSKKYSDSAKST 89


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 24/85 (28%), Positives = 33/85 (38%)
 Frame = -2

Query: 435 EIAEQLAVSRSLTQKTQXXXXXXXXXXDNVVIPDIALAQDPMNPWMLKQNNKSNVDAEFD 256
           E +E LAVS   T   +          + V   +    + P  P  L    + + D EFD
Sbjct: 43  EKSENLAVSSEKTTSKKKKGKKNKGNKNQVSDDESQELESPQGPKELTAVTELD-DDEFD 101

Query: 255 FGYKKYLKGKMFKHKEDSGSEDEAE 181
           +  KK  KGK  K  E+     E E
Sbjct: 102 YKPKKGKKGKKSKKVEEDDEPQEIE 126


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 312 MNPWMLKQNNKSNVDAEFDFGYKKYLKGKMFKHKEDSGSEDEAE 181
           +N +   Q+N S+  + F   Y   +    ++ KE S S+D AE
Sbjct: 309 LNDYQAAQSNISSPSSRFPTPYSPSVPFGTYQEKEKSYSQDHAE 352


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 300 MLKQNNKSNVDAEFDFGYKKYLKGKMFKHKEDSGSEDEAEKNNDT 166
           +++QNN    +  + F   +Y         E+SGSEDE +   DT
Sbjct: 609 LIQQNNAEQDEPSYKFHKYEY-------SSEESGSEDEFKSEKDT 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,687
Number of Sequences: 5004
Number of extensions: 26992
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)