Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18g06
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611...    31   0.48 
12_01_0286 - 2127622-2127897,2128611-2128997,2129195-2129550,212...    28   4.5  
03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886...    28   4.5  
01_06_0231 + 27727110-27727206,27727315-27727447,27727491-277275...    28   4.5  

>03_02_0961 +
           12759701-12760054,12760294-12760420,12760719-12761167,
           12761369-12761590,12761672-12761980,12762092-12762430,
           12762504-12762584,12762661-12762756,12762846-12763220,
           12763400-12763531,12763962-12764132
          Length = 884

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 522 ERHXLRHKXXGKWAKNKMIRA--KYDKEARQEIAEQLAVSRSLTQK 391
           ER  L+HK   KWAK  + R     D+  R  IA QL  +  LT+K
Sbjct: 385 ERMRLKHKNTSKWAKRILKRGLDVQDEGTRAAIAAQLQQNALLTRK 430


>12_01_0286 -
           2127622-2127897,2128611-2128997,2129195-2129550,
           2129923-2130046,2130128-2130196,2131190-2131238,
           2132222-2132336,2132854-2132903,2133000-2133137,
           2134182-2134228
          Length = 536

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 246 KKYLKGKMFKHKEDSGSEDEAEKNNDTTKACSD 148
           K Y K K+ + KE+   E E  +  D  K C +
Sbjct: 5   KNYYKEKLMRRKEEKKEEPETPRYRDRAKECRE 37


>03_02_0493 -
           8866685-8866888,8866989-8867059,8867143-8867416,
           8867666-8868036,8868127-8868482,8868558-8868630,
           8869307-8869412,8869667-8869760,8870616-8870680,
           8871655-8871927
          Length = 628

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 21/107 (19%), Positives = 47/107 (43%)
 Frame = -2

Query: 552 GGSGKNLEHLERHXLRHKXXGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQXXXX 373
           GG G  +  +  + L  +  G  A  ++   K+     +   +++AV R L+ K +    
Sbjct: 12  GGGGSGVRRVGDYVLVRQI-GSGAYARVWLGKHRTRGTEVALKEIAVER-LSSKLRESLL 69

Query: 372 XXXXXXDNVVIPDIALAQDPMNPWMLKQNNKSNVDAEFDFGYKKYLK 232
                   +  P++    + +   +L  NN++++    DFG+ K+L+
Sbjct: 70  SEVDILRRIRHPNVIALHESIRNILLVANNENSLLKIADFGFAKFLE 116


>01_06_0231 +
           27727110-27727206,27727315-27727447,27727491-27727553,
           27729069-27729140,27729640-27729783,27729868-27729990,
           27730102-27730157,27730249-27730635,27731176-27731366,
           27731498-27731630,27731715-27731869,27732188-27732379,
           27732490-27732750
          Length = 668

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
 Frame = -2

Query: 303 WMLKQNNKSNVDAEFDFG-YKKYLKGKMFKHKE-----DSGSEDEAEKNND 169
           W L QN+  N D E DF  Y +  +G +++  E     DS SE+  + NN+
Sbjct: 179 WPLIQNSYRNFDQEIDFDVYDE--RGDVYQRSENGFESDSSSEENTKDNNN 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,226,515
Number of Sequences: 37544
Number of extensions: 144597
Number of successful extensions: 372
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)