Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18g06
(565 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87455-1|BAA13396.2| 772|Homo sapiens KIAA0266 protein. 64 2e-10
BC122536-1|AAI22537.1| 766|Homo sapiens UTP14, U3 small nucleol... 64 2e-10
BC089407-1|AAH89407.1| 766|Homo sapiens UTP14C protein protein. 64 2e-10
AL139082-4|CAI12891.1| 766|Homo sapiens UTP14, U3 small nucleol... 64 2e-10
BC014987-1|AAH14987.1| 771|Homo sapiens UTP14, U3 small nucleol... 64 3e-10
BC009649-1|AAH09649.1| 771|Homo sapiens UTP14, U3 small nucleol... 64 3e-10
BC001149-1|AAH01149.1| 771|Homo sapiens UTP14, U3 small nucleol... 64 3e-10
AL034405-6|CAI42909.1| 320|Homo sapiens UTP14, U3 small nucleol... 64 3e-10
AL034405-5|CAI42908.1| 771|Homo sapiens UTP14, U3 small nucleol... 64 3e-10
>D87455-1|BAA13396.2| 772|Homo sapiens KIAA0266 protein.
Length = 772
Score = 64.5 bits (150), Expect = 2e-10
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Frame = -2
Query: 540 KNLEHLERHXLRHKXXGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ----XXXX 373
+N +ER L+H+ GKWAK+K I AKYD EARQ + EQLA ++ LTQK Q
Sbjct: 292 ENARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVASESEEE 351
Query: 372 XXXXXXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 265
+ +++P +A + D NPWM + +A
Sbjct: 352 EGGTEVEELLVPHVANEVQMNVDGPNPWMFRSCTSDTKEA 391
>BC122536-1|AAI22537.1| 766|Homo sapiens UTP14, U3 small nucleolar
ribonucleoprotein, homolog C (yeast) protein.
Length = 766
Score = 64.5 bits (150), Expect = 2e-10
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Frame = -2
Query: 540 KNLEHLERHXLRHKXXGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ----XXXX 373
+N +ER L+H+ GKWAK+K I AKYD EARQ + EQLA ++ LTQK Q
Sbjct: 286 ENARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVASESEEE 345
Query: 372 XXXXXXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 265
+ +++P +A + D NPWM + +A
Sbjct: 346 EGGTEVEELLVPHVANEVQMNVDGPNPWMFRSCTSDTKEA 385
>BC089407-1|AAH89407.1| 766|Homo sapiens UTP14C protein protein.
Length = 766
Score = 64.5 bits (150), Expect = 2e-10
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Frame = -2
Query: 540 KNLEHLERHXLRHKXXGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ----XXXX 373
+N +ER L+H+ GKWAK+K I AKYD EARQ + EQLA ++ LTQK Q
Sbjct: 286 ENARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVASESEEE 345
Query: 372 XXXXXXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 265
+ +++P +A + D NPWM + +A
Sbjct: 346 EGGTEVEELLVPHVANEVQMNVDGPNPWMFRSCTSDTKEA 385
>AL139082-4|CAI12891.1| 766|Homo sapiens UTP14, U3 small nucleolar
ribonucleoprotein, homolog C (yeast) protein.
Length = 766
Score = 64.5 bits (150), Expect = 2e-10
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Frame = -2
Query: 540 KNLEHLERHXLRHKXXGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ----XXXX 373
+N +ER L+H+ GKWAK+K I AKYD EARQ + EQLA ++ LTQK Q
Sbjct: 286 ENARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVASESEEE 345
Query: 372 XXXXXXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 265
+ +++P +A + D NPWM + +A
Sbjct: 346 EGGTEVEELLVPHVANEVQMNVDGPNPWMFRSCTSDTKEA 385
>BC014987-1|AAH14987.1| 771|Homo sapiens UTP14, U3 small nucleolar
ribonucleoprotein, homolog A (yeast) protein.
Length = 771
Score = 64.1 bits (149), Expect = 3e-10
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Frame = -2
Query: 525 LERHXLRHKXXGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ-----XXXXXXXX 361
+ER L+H+ GKWAK+K I AKYD EARQ + EQL+ ++ LTQK Q
Sbjct: 292 MERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLSKNKELTQKLQVASESEEEEGGTE 351
Query: 360 XXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 265
+ +++PD+ + D NPWML+ +A
Sbjct: 352 DVEELLVPDVVNEVQMNADGPNPWMLRSCTSDTKEA 387
>BC009649-1|AAH09649.1| 771|Homo sapiens UTP14, U3 small nucleolar
ribonucleoprotein, homolog A (yeast) protein.
Length = 771
Score = 64.1 bits (149), Expect = 3e-10
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Frame = -2
Query: 525 LERHXLRHKXXGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ-----XXXXXXXX 361
+ER L+H+ GKWAK+K I AKYD EARQ + EQL+ ++ LTQK Q
Sbjct: 292 MERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLSKNKELTQKLQVASESEEEEGGTE 351
Query: 360 XXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 265
+ +++PD+ + D NPWML+ +A
Sbjct: 352 DVEELLVPDVVNEVQMNADGPNPWMLRSCTSDTKEA 387
>BC001149-1|AAH01149.1| 771|Homo sapiens UTP14, U3 small nucleolar
ribonucleoprotein, homolog A (yeast) protein.
Length = 771
Score = 64.1 bits (149), Expect = 3e-10
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Frame = -2
Query: 525 LERHXLRHKXXGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ-----XXXXXXXX 361
+ER L+H+ GKWAK+K I AKYD EARQ + EQL+ ++ LTQK Q
Sbjct: 292 MERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLSKNKELTQKLQVASESEEEEGGTE 351
Query: 360 XXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 265
+ +++PD+ + D NPWML+ +A
Sbjct: 352 DVEELLVPDVVNEVQMNADGPNPWMLRSCTSDTKEA 387
>AL034405-6|CAI42909.1| 320|Homo sapiens UTP14, U3 small nucleolar
ribonucleoprotein, homolog A (yeast) protein.
Length = 320
Score = 64.1 bits (149), Expect = 3e-10
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Frame = -2
Query: 525 LERHXLRHKXXGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ-----XXXXXXXX 361
+ER L+H+ GKWAK+K I AKYD EARQ + EQL+ ++ LTQK Q
Sbjct: 124 MERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLSKNKELTQKLQVASESEEEEGGTE 183
Query: 360 XXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 265
+ +++PD+ + D NPWML+ +A
Sbjct: 184 DVEELLVPDVVNEVQMNADGPNPWMLRSCTSDTKEA 219
>AL034405-5|CAI42908.1| 771|Homo sapiens UTP14, U3 small nucleolar
ribonucleoprotein, homolog A (yeast) protein.
Length = 771
Score = 64.1 bits (149), Expect = 3e-10
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Frame = -2
Query: 525 LERHXLRHKXXGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ-----XXXXXXXX 361
+ER L+H+ GKWAK+K I AKYD EARQ + EQL+ ++ LTQK Q
Sbjct: 292 MERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLSKNKELTQKLQVASESEEEEGGTE 351
Query: 360 XXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 265
+ +++PD+ + D NPWML+ +A
Sbjct: 352 DVEELLVPDVVNEVQMNADGPNPWMLRSCTSDTKEA 387
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,071,570
Number of Sequences: 237096
Number of extensions: 877214
Number of successful extensions: 2103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2103
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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