Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18g06
         (565 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069576-1|AAL39721.1|  771|Drosophila melanogaster LD31322p pro...    77   2e-14
AE014296-2539|AAF49613.2|  771|Drosophila melanogaster CG12301-P...    77   2e-14

>AY069576-1|AAL39721.1|  771|Drosophila melanogaster LD31322p
           protein.
          Length = 771

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 48/124 (38%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
 Frame = -2

Query: 522 ERHXLRHKXXGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQXXXXXXXXXXDNVV 343
           ER  LRHK  G WAKN  IRAKYDK+ R+++AEQLAVSR LTQK Q            V+
Sbjct: 281 ERASLRHKNTGTWAKNLQIRAKYDKDVRKDLAEQLAVSRELTQKKQVSDSEDETTKKRVL 340

Query: 342 IPDIALAQDPMNPW----MLKQNNKSNVDAEFDFGYKKY--LKGKMFKHKEDSGSEDEAE 181
             +     DP NPW      +Q    N ++E    +++Y   + K  K  E+   + E  
Sbjct: 341 PEEEDNDYDPFNPWTKRKATEQTENGNGESE-GSNWRQYWTKRNKNEKLLEEHRRDLEGV 399

Query: 180 KNND 169
           ++ND
Sbjct: 400 QDND 403


>AE014296-2539|AAF49613.2|  771|Drosophila melanogaster CG12301-PA
           protein.
          Length = 771

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 48/124 (38%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
 Frame = -2

Query: 522 ERHXLRHKXXGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQXXXXXXXXXXDNVV 343
           ER  LRHK  G WAKN  IRAKYDK+ R+++AEQLAVSR LTQK Q            V+
Sbjct: 281 ERASLRHKNTGTWAKNLQIRAKYDKDVRKDLAEQLAVSRELTQKKQVSDSEDETTKKRVL 340

Query: 342 IPDIALAQDPMNPW----MLKQNNKSNVDAEFDFGYKKY--LKGKMFKHKEDSGSEDEAE 181
             +     DP NPW      +Q    N ++E    +++Y   + K  K  E+   + E  
Sbjct: 341 PEEEDNDYDPFNPWTKRKATEQTENGNGESE-GSNWRQYWTKRNKNEKLLEEHRRDLEGV 399

Query: 180 KNND 169
           ++ND
Sbjct: 400 QDND 403


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,791,451
Number of Sequences: 53049
Number of extensions: 264343
Number of successful extensions: 695
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2193288294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)