Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18g06
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    31   0.43 
Z47073-4|CAM33507.1|  954|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z47073-3|CAA87374.1|  999|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    28   5.3  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    28   5.3  
U58761-7|AAB00717.1|  481|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical p...    27   9.3  

>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 279 SNVDAEFDFGYKKYLKGKMFKHKEDSGSEDEAEKNNDTTKA 157
           S+ D++ DF  KK+ K K  + K D  S+D++E      K+
Sbjct: 221 SDSDSDSDFDKKKWKKNKAKRSKRDDSSDDDSEMERRRKKS 261


>Z47073-4|CAM33507.1|  954|Caenorhabditis elegans Hypothetical
           protein ZC506.4b protein.
          Length = 954

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 385 LCLLCQTSTNC*LFCYFLPSLFIILCSDH 471
           LC+    S N  L C F P L+IIL   H
Sbjct: 859 LCISISMSANVALACIFSPKLWIILFEKH 887


>Z47073-3|CAA87374.1|  999|Caenorhabditis elegans Hypothetical
           protein ZC506.4a protein.
          Length = 999

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 385 LCLLCQTSTNC*LFCYFLPSLFIILCSDH 471
           LC+    S N  L C F P L+IIL   H
Sbjct: 904 LCISISMSANVALACIFSPKLWIILFEKH 932


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 285 NKSNVDAEFDFGYKKYLKGKMFKHKEDSGSEDEAEKNNDTTKACSD 148
           +K++   +FD    ++L+ +  +H   SGSE E E  +   +  SD
Sbjct: 258 DKASSSRQFDSHIPRHLQQQRSRHDSSSGSESEHETRSSHRRRNSD 303


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 285 NKSNVDAEFDFGYKKYLKGKMFKHKEDSGSEDEAEKNNDTTKACSD 148
           +K++   +FD    ++L+ +  +H   SGSE E E  +   +  SD
Sbjct: 258 DKASSSRQFDSHIPRHLQQQRSRHDSSSGSESEHETRSSHRRRNSD 303


>U58761-7|AAB00717.1|  481|Caenorhabditis elegans Hypothetical
           protein C01F1.1 protein.
          Length = 481

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -2

Query: 312 MNPWMLK---QNNKSNVD-AEFDFGYKKYLKGKMFKHKEDSGSEDEAEKNNDTTKA 157
           MN + LK   QN  S  D +E     K+ LK K     +DS  +DE E  +D  KA
Sbjct: 180 MNQFALKAAIQNQLSATDESEMTEQQKRLLKIKDEASSDDSDGDDEGEGGDDGKKA 235


>U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical
           protein C33G8.2 protein.
          Length = 390

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 294 KQNNKSNVDAEFDFGYKKYLKGKMFKHKEDSGSEDEAEKNNDTTKACSD 148
           K+ +K     + D   K+  K K  K K+D   EDE +K  D  K   D
Sbjct: 179 KKKDKKKKKDDNDEEEKEKDKKKKDKKKDDDDDEDENDKKKDKKKKKDD 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,640,905
Number of Sequences: 27780
Number of extensions: 152664
Number of successful extensions: 553
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)